RNA id: TU879230


Basic Information

Item Value
RNA id TU879230
length 347
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G771725
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12187080 ~ 12187426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataatgagggaaatgagaaccaggtgtgtgggaaaacaagacaagacaaatggaaaatgagaaatggatcggtgatggctagaagaccgacGACgttgaccgccgagcaccgcccgaacaaggagaggcatcgacgtcggcagaagtcgtgacagacaAGCTATAGCTTACTGTATGTTTGGCGAGACAACAGAAAGCAATCATTTTGTCATGCTTGTTTTCCATCAACTTCTCTACACTAAATTCTTTTACAGAAGTGTTTTGACTACAGAAGTGGAATTTCCTCAAATTCAAACGGCAATTGCatcattaaaacatgttttaaatatCAATGGACAGTTTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879228 lncRNA downstream 1345 12185486 ~ 12185735 (-) True trnas-uga-2
TU879200 lncRNA downstream 14508 12138383 ~ 12172572 (-) True G771697
TU879159 lncRNA downstream 58710 12092145 ~ 12128370 (-) False LOC110531465
TU879160 lncRNA downstream 58710 12092145 ~ 12128370 (-) True LOC110531465
TU879178 lncRNA downstream 98301 12088459 ~ 12088779 (-) True G771679
TU879231 lncRNA upstream 245 12187671 ~ 12187909 (-) True G771726
TU879232 lncRNA upstream 815 12188241 ~ 12188777 (-) True G771727
TU879233 lncRNA upstream 4212 12191638 ~ 12191994 (-) True G771728
TU879235 lncRNA upstream 7068 12194494 ~ 12194703 (-) True G771730
TU879237 lncRNA upstream 7905 12195331 ~ 12197759 (-) True G771732
trnas-uga-2 mRNA downstream 1367 12185632 ~ 12185713 (-) False trnas-uga-2
XM_021614669.2 mRNA downstream 34065 12147494 ~ 12153015 (-) True LOC110531459
XM_036987352.1 mRNA downstream 34070 12147494 ~ 12153010 (-) False LOC110531459
XM_036987357.1 mRNA downstream 42294 12126227 ~ 12144786 (-) False LOC110531465
XM_021614675.2 mRNA downstream 42295 12126227 ~ 12144785 (-) False LOC110531465
trnaw-cca-4 mRNA upstream 11281 12198707 ~ 12198778 (-) True trnaw-cca-4
XM_021614680.2 mRNA upstream 248914 12436340 ~ 12441768 (-) True sox19b
XM_021614681.2 mRNA upstream 281379 12468805 ~ 12479392 (-) True LOC110531476
XR_005053463.1 mRNA upstream 283550 12470976 ~ 12471118 (-) True LOC118966197
XR_005053466.1 mRNA upstream 286242 12473668 ~ 12473792 (-) True LOC118966200
TU879101 other downstream 215726 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 298365 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 398511 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 410468 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 485497 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 806843 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 806843 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1402827 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1509753 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1792902 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile