RNA id: TU879231


Basic Information

Item Value
RNA id TU879231
length 239
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G771726
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12187671 ~ 12187909 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccgccgtcccatcatactctcTGGGAAGGGCGAGACGCATCCCACTGGAACCGGGTACAGGAGGGACGGGTAGTGAGGACTCCTGTTGTGCTGGAGGAGGTACTGGAGGACCTCgctgtctctcccagcgatccattATCTGACAGACGCGGTCCATGGTGGTGCCATGATGGTGAATCAACGCTGTGTGCTCCTCGACTCCTCTACCATAggacctgctcctgctgactccataatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879230 lncRNA downstream 245 12187080 ~ 12187426 (-) True G771725
TU879228 lncRNA downstream 1936 12185486 ~ 12185735 (-) True trnas-uga-2
TU879200 lncRNA downstream 15099 12138383 ~ 12172572 (-) True G771697
TU879159 lncRNA downstream 59301 12092145 ~ 12128370 (-) False LOC110531465
TU879160 lncRNA downstream 59301 12092145 ~ 12128370 (-) True LOC110531465
TU879232 lncRNA upstream 332 12188241 ~ 12188777 (-) True G771727
TU879233 lncRNA upstream 3729 12191638 ~ 12191994 (-) True G771728
TU879235 lncRNA upstream 6585 12194494 ~ 12194703 (-) True G771730
TU879237 lncRNA upstream 7422 12195331 ~ 12197759 (-) True G771732
TU879241 lncRNA upstream 26114 12214023 ~ 12235651 (-) True G771735
trnas-uga-2 mRNA downstream 1958 12185632 ~ 12185713 (-) False trnas-uga-2
XM_021614669.2 mRNA downstream 34656 12147494 ~ 12153015 (-) True LOC110531459
XM_036987352.1 mRNA downstream 34661 12147494 ~ 12153010 (-) False LOC110531459
XM_036987357.1 mRNA downstream 42885 12126227 ~ 12144786 (-) False LOC110531465
XM_021614675.2 mRNA downstream 42886 12126227 ~ 12144785 (-) False LOC110531465
trnaw-cca-4 mRNA upstream 10798 12198707 ~ 12198778 (-) True trnaw-cca-4
XM_021614680.2 mRNA upstream 248431 12436340 ~ 12441768 (-) True sox19b
XM_021614681.2 mRNA upstream 280896 12468805 ~ 12479392 (-) True LOC110531476
XR_005053463.1 mRNA upstream 283067 12470976 ~ 12471118 (-) True LOC118966197
XR_005053466.1 mRNA upstream 285759 12473668 ~ 12473792 (-) True LOC118966200
TU879101 other downstream 216317 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 298956 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 399102 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 411059 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 486088 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 806360 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 806360 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1402344 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1509270 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1792419 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile