RNA id: TU879237


Basic Information

Item Value
RNA id TU879237
length 1389
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id G771732
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12195331 ~ 12197759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTTGAAGAAACATTTTTCAGCCTTTATTACAAAATGAAACAAATTAAAATCTGCATAGAATTAAATTAAAACACGAGAAACAACAATTTACAGAAGATGCAAATGTCATACCAATATAAACATgactataggctacatattacagTCCCTGATGTGTATATCATAAATACTCTAGGCCCCAGAGCAAAGATAAAGTAAATATAATCACTCTTCAAATAACCATTCATTCCTCTTGACGAAGGAGAGTAAAAGGGTGGGGGGTTGTTGCTGTCAGTTCTTTACGGTCCTCAAGTGGTCGTGGTTGAAAAGTGGTCACAGTCGATGGTCATCATTGATCATCACGCTTCCTActcctttcCGCCACAGGTACCACAGATGCATCCGAACAGTCCGTTGACCATCTGTATTACACACAGCACCAGCTCCACACTAGCAGCCACAAGTAGAGTGGCGAACAGGCCGATATTAAACTCCACAACATCCTTTGGCTCTTCACAAGTCGTCCAGAGTTCACTGTCACCCAGGTAGCTGCCGTTGTTTTTGAAGAAGGGCCTCCCCCAACTTGCATCTTTGTCACCTGGAGCCTTGAATAAGCAGACAGGCCCGTTGGCCAGGACCAGGGCAGCCGTAGCCAAACTGTACAGAGCTCCAACAACCCCAGCAGCAGCAAACCCAATGGACAGGAACATCCCACAGCGGTTGGCACAGCAACCCTTACTGCTGGTCAGGTGGATGTGGATGGCTGGGATAaggcactgagagagagagagagagagaggcacagagagagagacactcacagagagagacacagagagagacacacagagagagacagagagagagagacacacacagagagagacacagagagagagagagagagagagagagagagagagagagagagagagagagacacagagagagacacagagagagagagagagagagagagagagagagagagagagagagagagagagaaaacacacacacactcttcttcAACTGTTTTGTCATGGAGTAGCATATTGAGGCAGCATATTTCAGATGTACAGATCCATTCAGCATTCAAATGAATTCACACTTAGGAAACTGTTGATTATGAAAAGGGTActtttatttttcttaaaaaGTACTAAACAAACCTGTGATCATGGTATGACCAATGCTCTATAGAATCAGCATGTCTAAACCAagattggggtcaattccatttctatTCAGTCAGTATTGTTTTTCAATAAGAAACTTTGGAGTTAAAAAATGGAACTGACCTAAACACTGGTCTTCTAAACCAATCATGTTACATAATATTTAAAATTAAACCAATCATGTTACATAATATTTAAAATTAAACCAATCATGTTACATAATATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879235 lncRNA downstream 628 12194494 ~ 12194703 (-) True G771730
TU879233 lncRNA downstream 3337 12191638 ~ 12191994 (-) True G771728
TU879232 lncRNA downstream 6554 12188241 ~ 12188777 (-) True G771727
TU879231 lncRNA downstream 7422 12187671 ~ 12187909 (-) True G771726
TU879230 lncRNA downstream 7905 12187080 ~ 12187426 (-) True G771725
TU879241 lncRNA upstream 16264 12214023 ~ 12235651 (-) True G771735
TU879257 lncRNA upstream 38151 12235910 ~ 12236188 (-) True G771751
TU879258 lncRNA upstream 38627 12236386 ~ 12236628 (-) True G771752
TU879259 lncRNA upstream 39187 12236946 ~ 12237967 (-) True G771753
TU879263 lncRNA upstream 45843 12243602 ~ 12243819 (-) True G771757
trnas-uga-2 mRNA downstream 9618 12185632 ~ 12185713 (-) False trnas-uga-2
XM_021614669.2 mRNA downstream 42316 12147494 ~ 12153015 (-) True LOC110531459
XM_036987352.1 mRNA downstream 42321 12147494 ~ 12153010 (-) False LOC110531459
XM_036987357.1 mRNA downstream 50545 12126227 ~ 12144786 (-) False LOC110531465
XM_021614675.2 mRNA downstream 50546 12126227 ~ 12144785 (-) False LOC110531465
trnaw-cca-4 mRNA upstream 948 12198707 ~ 12198778 (-) True trnaw-cca-4
XM_021614680.2 mRNA upstream 238581 12436340 ~ 12441768 (-) True sox19b
XM_021614681.2 mRNA upstream 271046 12468805 ~ 12479392 (-) True LOC110531476
XR_005053463.1 mRNA upstream 273217 12470976 ~ 12471118 (-) True LOC118966197
XR_005053466.1 mRNA upstream 275909 12473668 ~ 12473792 (-) True LOC118966200
TU879101 other downstream 223977 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 306616 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 406762 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 418719 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 493748 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 796510 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 796510 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1392494 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1499420 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1782569 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile