RNA id: TU879259


Basic Information

Item Value
RNA id TU879259
length 1022
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G771753
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12236946 ~ 12237967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaactttggattggagatgtttgatatgggtcggGAAGGAGAGTtttcagtctaaccagacacctaagtatttgtagtccacgtattctaagtcagagccgtccagagtagtgatgttggacaggcaggtaggtgcaggtagcgatcggttgaagagcatgcatttagttttacttgtatttaaaagcaattggaggccacggaaggagagttgtatggcattgaagcttgcctggagggttgttaacacagtgtccaaagaagggccagaagtatacagaatggtgtcgtctgcgtagaggtggatcagagactcaccagcagcaagagcgacctcattgatgtatacagagaagagagtcggtccaagaattgaaccctgtggcacgcccatagagactgccagaggtccggacagcagaccctccgatttgacacactgaactctatcagagaattagttggtgaaccaggcgaggcaatcatttgagaaaccaaggctgtcgagtctgccgatgaggatgtggtgattgacagagtcgaatgccttggacagatcaatgaatacggctgcacagtaatgtttcttatcgatggcggttaagatatcgtttaggaccttgagcgtggctgaggtgcacccatgaccagctctgaaaccagattgcatagcagagaaggtatggtgagattcaaaatggtcggtaatctgtttgttgacttggctttcgaagaccttagaaaggcatggtaggatagatataggtctgtagcagtttgggtcaagagtgtccccccctttgaagagggggatgaccgcagcagctttccaatctttgggaatctcagacgacacgaaagagaggttgtacaggctagtaataggggtggcaacaatttcggcagataatttttagaaagaaagggtccagattgtctagcccggctgatttgtaggggtccagattttgcagctcattcagaacatcagctgaacggacttgggagaaggagaaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879258 lncRNA downstream 318 12236386 ~ 12236628 (-) True G771752
TU879257 lncRNA downstream 758 12235910 ~ 12236188 (-) True G771751
TU879241 lncRNA downstream 1295 12214023 ~ 12235651 (-) True G771735
TU879237 lncRNA downstream 39187 12195331 ~ 12197759 (-) True G771732
TU879235 lncRNA downstream 42243 12194494 ~ 12194703 (-) True G771730
TU879263 lncRNA upstream 5635 12243602 ~ 12243819 (-) True G771757
TU879265 lncRNA upstream 8545 12246512 ~ 12246911 (-) True G771759
TU879267 lncRNA upstream 11619 12249586 ~ 12249895 (-) True G771761
TU879268 lncRNA upstream 11972 12249939 ~ 12250214 (-) True G771762
TU879269 lncRNA upstream 12259 12250226 ~ 12250574 (-) True G771763
trnaw-cca-4 mRNA downstream 38168 12198707 ~ 12198778 (-) True trnaw-cca-4
trnas-uga-2 mRNA downstream 51233 12185632 ~ 12185713 (-) False trnas-uga-2
XM_021614669.2 mRNA downstream 83931 12147494 ~ 12153015 (-) True LOC110531459
XM_036987352.1 mRNA downstream 83936 12147494 ~ 12153010 (-) False LOC110531459
XM_036987357.1 mRNA downstream 92160 12126227 ~ 12144786 (-) False LOC110531465
XM_021614680.2 mRNA upstream 198373 12436340 ~ 12441768 (-) True sox19b
XM_021614681.2 mRNA upstream 230838 12468805 ~ 12479392 (-) True LOC110531476
XR_005053463.1 mRNA upstream 233009 12470976 ~ 12471118 (-) True LOC118966197
XR_005053466.1 mRNA upstream 235701 12473668 ~ 12473792 (-) True LOC118966200
XR_005053465.1 mRNA upstream 237540 12475507 ~ 12475649 (-) True LOC118966199
TU879101 other downstream 265592 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 348231 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 448377 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 460334 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 535363 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 756302 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 756302 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1352286 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1459212 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1742361 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile