RNA id: TU879161


Basic Information

Item Value
RNA id TU879161
length 9168
lncRNA type read_through
GC content 0.44
exon number 2
gene id G771662
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12255486 ~ 12298729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caattggtggctgactaaatacttttttgccccactgtataagtgctttcttgagcagggcgaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgtaactccacggggtgagatcttgcatggagccccaggccgaagGAGGTTGACAGTTCCTTTGTGTTTCTTCCCTTTGCGAATAattgcaccaactgttgtcaccctCTCACCAAGCtccttggcgatggtcttgtagcccattccagccttgtgttgGTCTagaatcttgtccctgacatccttggagagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacaaactgagattaggagcactccctttaagagtgtgctcctaatctcagctcgttacctgtataagagacacctgggagccagaaatctttctgattgagagggggtcaaatacttatttccctcattaaaatgcaaatcaatttacaACATTTTTTAcgtgcgtttttctggattttttgttgttattctgtctctcactgttcaaataaacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaattagtaggggatcaaatacttttttccctcactgtatgtaaTACAGTAACCTAGTTGATGAAAAGGCATGTGTTTGTTTAGGAAGCAATAGTAATGGCATCTTTTTGTAGGAACTAACAGAGGCTAACTCCACCATGGCTCGTTGGCCAAAGCCTAAGGGGAAATGAATGaaggtaaacacaggcttagaaGAACTTacacgttttgttctatgagattaATCTGCATCAGCTAATGTCACTTTTTGTGAATgttgaagcatttatgtaatcaAAATAAGCACATAAatgcttcataattcataaagctCATGTTACTTGAGCGATATTATCTCATCGAACAAAACGTATATCTCCTAAGCCTGTTAACCTTATTTTCAGCATTTATCCCAAAACTCCCTTCTTTCCCCATTCATTTGCCCCATAGGAATGTCTAAACGAAACAGGTTTCATTTTTTTTGGACTACAAAACTGGCGAACTCTATTCTACACCATCATTACAGTGCTAATACTGATTCAGAGGGAGGAACAATGCTGAGTTAGTTAATCGGGGAAGCCTAGTGACAAATGAAGAAAAAGTAATTACTTTATTGAGTCCAAGACACTTGATATTAACCGTTGACAAATCCCAGTTATGCAACACTGTTCCATTGAATGGCCCCTGGCCCCTGCCTTAGGCCCCCTGACTAACGTTCACAATGGCTTTTTATGATTTCCTCATTATTCAAATCAGTTTTGATTTCATAATGAGTGCTATGAAAGGCGTGTTTGCTTAAGGCTAGCCAACATTATAAAAATCCTATAAACATCCTAGGCAAGACAACTTTACCCCAGACATCATTAGTCAGGGGTGgaatcattatttttattttgtttacatAGATTCCTAGAAATAAaaaaatgggggtgggggggttcccAGAGTGACTTTTTCCCATTTCCACACCTGCCCATATATCATAGTGTACTATTGTAGGCTATTGTGTAGGGCTCTGCTGCTGTCTCCGATCTAAGGGGGAACTCCTCTCCAATTTAATCACTCAACATTGACCCCTATTAGAATTCACTTACATTCTACCAAGCCCTTTAGACCCCAGCGGTCACCTGTGGTGATAGAGTATAAAGAGAAAACAACACAAACGTTACAGCATTTAACCCAAGATGGTAAACCTCAGCATCTGAAAGAAAGAACCAACTCATTGACAATACCTTGTGTTATGGTGAATTTCCAACAGCAGATGAATAAAGGACACCAGTATCTTTGGTTCAAATATGTCTACCACCACAGAATGATCATTCATAGCCTCTTCGTGCCCCAAGGAGACGTGCACATCCCATGTACACGTTTCATTTCGAGGCACGTTTGCAAAGTAGACAGGTGATCAACACAGACAACTGTCCTTATACCGCAGACTAGTGTGATGAGATTCTTACCACGGCTAGATGTACCACAGTATCTTGTTTGGGTCCGTGGACAGTCACTGTGTCCCGACACACAGTAGCACACCATCTAATTCACATGGCCAATACAGTATGAGTCGAGTGTGAGTCGAGTATGTGTGTGGAAGGTACCGACATAGATTCAGTCACTGTGAGATGACGATAAGGTTACCGCCCAATGATGTGTAGATGACTGACAGGGGTGTTGTATTGGAGCCACCGCACAGCCATTTTGGTATTCCTAagccaatgtaaaaaaaaagaacgATTTTGGAAGCTAcaaaaatgcatttattaatgtctacatcagtctacacacaaataccccataaaaaaaacaggtttttagacatttttgcaaatattttacacacctactcattcaagggattttctttattttttactattttctacattatagaataatagtgaagacatcaaaactatgaaataaaacatatgggatcacgtagtaaccaaaaaagtgttaaacaaatcaaaatatattttagattcttcaaagtagccaccttttgcattgacgacagctttgcacactcttggcattctctcaaccagcttcgtgaggaatgattttccaacagttttgaaggagttcccacatatgctgagcccttgttggctgcttttccttcattctgcggtccaactcatcccaaaccatctcaattgggttgaggtcgggtgattgtagaggccaggccatctgatgcagcactccatcactttccttggtcaaattgcccttacacagcctggaggtgtgttttgggtcattgtcctgttgaaaaacaagagatagtcccactaagcgcaaacaggATAGCATGGCATATCgccgcagaatgctgtggtagccatgctgattaagtgtgccttgaattctaaataaatcactgacagtgtcaccagcaaagcacccccacaccatcacacctcctcccccaAGCTTCACAGTGGTAACCACACATGCGGTGGTCATCCGTTCcactactctgcatctcacaaagacacagcggttggaaccaaaaatctcaaacttggactcatcacaccaaaggacagatttccattggtctaatgtccattgcttgtgtttcttggccaaagcaagtctcttcttcttctcgggctctcgagtggcacagcggtctaaggcactgtatctcagtgcttcAGGTATCATGACAgatcctggttcaattccaggctgtatcacaaccggcagtgattgggagtcccatagggtagcgaacaattggcccagcgtcgtccgggttaaggtttggctggggtaggccgtcactgtaaataagaatttgttcttaactgatttgcctagttaaatacaaataaaaaaatagtagtggtttctttgcagcaatttcaccatgaaggcatgattcacgcagtcttcctttcctgtggcggtcctcatgagagccagtttcatcagagcGCTTGagagtttttgcgactgcacttgaagaaacttcaaaagaaatgttccggattgactgaccttcatttcttaaagtaatggactaggtattttaccaaatagggctatcttctgtataccacctctaccttgtcacaacacaattgattggctcaaaagcattaaggaaagaaattctacaaattaacttttaacaaggcacacttattaattgaaatgccttccaggtgactacctcatgaagctagttgagagaatgccaagagtgtgcaaagctgtcatcaagccaaagggtggctacttcgaagaatctgaaatataaaacatatttggatttgttactacatgattccatgtgttatttcatagttttgatgtcttcactattattctaaaatgtaaaacattgtaaaaataaagaaaaacccttggatgagtaggtgtgtccaaacttttgactggtactgtaagtattcagaccctttactcaggttcaagtccgggctctggctcggccactcaagaacattcagagacatgtcctgcattgtcttggctgtgtgcttagggtcgttgtcctattggaaggtgaaccttcgccccagtctgaggtcctgagcggtctggagcaggttttcatcaaggatctctatgcactttgctccgttcatctttccctcaatcctgactagtctcccagtgcctgaaatacatccccacagcatgatgctacctccaccatgcttcaccgggcaaagagttaaatcttggtttcatcagaccagagaatcttgtttcacatggtctgagagtcatttaggtgcctttgggaaaattccaagcgggctgtcatgtgacttttactgaggagtggcttctgtctggccactctaccataaatgcctgattggtggagtgctgcggagatggtggtccttctggaaggttctctcatctacacagaggaactggagctctgtcagagtgacaattgggttcttggtcaccaccctgaccaaggcctttctctccagattgctcagttgggccaggcggccagctctaggaagtcttggaagtaccaaacttcttccatttaagaatgatggaggccactgtgttcttgcagatcttcaatgcagcagaaatgttttgtacccttccccagatttgtgcctcgacacaatcctgtcacagagctctacaaacaatttgctaaaatgtctaaaacctgtttttgctttgtcattatggggtatcgtgatgtcattttggggtattgcgtgtagattgatgagatttttttaaaatacattttataataaggctgtaacgtaacaaaatgtggaaaaagggaaggggtctgaatactttccgaatgcactgtacacatcaGTGGTTATATCTAACCACTGATCTAAGGTTTTGCACTTCTTCCCCCACATTGCTACGGTTAGAAAGAAAGGCTAAAACTGATCTGTGCCTAAGGGCCTAACAGGGCAGTTTCTACCCGGAGCGTCCATCCACTTCCTCCATGTGGATCCTGAACGGCAACCCGTGTCCCGGGATGATGACATCAGAGGTGCGTAGCGCCTCCTGTCGGCTGGCCTCTTGAACTGCAGGATTCTCACTCAGTTCTCTCCAACTGTCGTCATCAGTGCAACGCTCAAATAGGTCCCCGGCAACAAGCACCGTGCCCATTGTGGTTCCCTTCACAAGAAGGCTCACATCGCGCCCTGTGTGGCCTGGAGTGGGTACTATTGACACCTGGTGGAGAAATTAAGGTATTGCAATGAGGTTCAGAGTACAGTGtgtgtgtgtgtgtgtgtgtgttaaaatgtATATACTATGTAAGATATGATGTACATAGGTGTTCTTGTATGTAAGGTATGCATGAGATGTACTCAGGCTTCACATGTGAATATCTATGTGGAGGGGGTGGAATCCTAGCTCGCATTGAAACTCACCATTGAGCCAGGGAAATACTGTGTATACTATATTACATACGGTATGTACAGTGTATGAAAAGCCACACTTAAAAAAGTGAATAGTCAGACTTGCTATCCATTCAACCACAGTGCTTCAGTTCAGATACAGTACATGTCGGTCCCTATCAAAGTACCGTGTGTTaacattaaaggcccagtgcagtcaacatTCTGTTATATAATTGACACCGTTGATGGAACTAACACCGTAgaagttttttaaattttttattatcagtgttatttcctgaaaGTTGCTGGTCGAAAAATAAAAatatctacacaggaccttctaaatCAGCAGGCTTGTATAGGCGGGAGTTACGGCtatccatggtgacatcaccatgcgatAAATGGTTTTATAGATAACAATAACAAAGAGTTAAaatcctctctgccaataacagctataATCCCCGCCCCGACAGTCCAAGCTAAATTCTAGCTTGAGAATTTTTCATAAAGAAACTATTTTTGCCCTTTTTAATAGAAGTCTATTACTTAATTGGTAGACAGAAATGATTTGACATTGATATAAAAACagctgcactgggcctttaagatgttctccatctatctctctagaAGACATCACAGTAAGGCCTATTGTGAGATTCACTGCTCTTCAATGCTGGCTTTGTATCAGTGGAGGCTAGTGTCACTTTAAATGATAGGACAGGCTCATTGGAATGGCATGAATAGAATgctatcaaacacatggaaaccatgtgattGTTGCCGTTCCTTTCATTGCATTCCAgccattatgagctgtcctcctcacaccagcctccactgcttcaTGTGAACTACTTTTCCAACGCCAGGCACACTGCGTTCAGAGGAAGGAATTCCATTCCGATCCTCAGTCAGAACATGCAACTCACATCATCCCTACCCCAGCATTTACAGTAGCTATGGCTGGCTGCCTGTTTGCTGTTTTAACATTAGCATTCAAGAAAAAGGTAAAAGCCAAGCTTTTtttctaaaaacaaaaaaaatgctgACATTTTGATTGTGCAAAAGAAGTTGGACCTCCGAATCTCAAGCAGAGAAGTAAACTTTTTGATTGACAGTTGGTCCACTGAATGCGATGCAATTCCATTTCATGTCCAGTGTTCATAAAGTCCGGAGAGCGAACTATACTGTGACATTCAGGGGAGCGTCTACTAGGAAACAGTTTTTTTATTGGCCTAATAGTAAAGATATTATTATCGTTtaactgtaaaaatgtattacattttaatGTGGCATGAGCACAACAAGTCATGAAGTAGTCATCTGATTGTAACACATATCACTTCAAAAAGTCGGCTACCTGCGGCTGTGCACGTTCCTCCACTCCAAAATAATTACAGCATCCAAACAGTGCCCTGTGCACGCGCCATTTAATTAATAGAAAGAGACATCTGCTATAGACACCATCAGTGTAATGACATTTGGTGATTGTCATTAGGCCTTCTACAGTGAGTGTATTcttggatgccaagggaagccatgTTTCCCCAAAAATGTgaacaatatttatttttttatacaaaaaTAAGTTAAGTCATTTTCCTTCAATTGGCAGAATGAATCTatatgtaactgccaaaataaaggaaacacttgagtaaatgagggatacaaagtatattgtaAGCAGGTggttccacacaggtgtggttcctgagtttattaagcaattaacatcccatcatgcttagtgTCATGTacaaaaatgcccagttgcccattattttggctaccatgactAGAAGAGAtatcagtgactttgaaagaggggtctcaaatgaGCATAAGGGGTTTAAAGGGTGTTTATCTCAGTCTAcagaactcaacccaattgaacacttatgggagattctggagtggtgcctgagacagcattttccaccgccatcaacaaaacaccaaattatggaatttgtcatggaagaatggtgtcacatcgctccaatagagttccagacacttagAGTTCCAGAATCTATGCCACAGCGGAATGAGCATTGAAGCTATTGTGAGCCAACGCTCTATTAAGACACTtgatgttggtgtttcctttattttggcagttacttgtCTCTCACCAGAGAAAGGATCCGAGCGTGCGAAACGCCGCCCCTCTGTCATACTTGTTTGGTCccgacagcatcagatacatgggcaaCACATACTAAGCGGTAAGATTGATGCGTCTTGCTGTCGGTGCGTGTCTAGGTCAAATTATCAATACCCCTCCCAGAAAAAAATTTAATGTTGGACTTTTGTTATCTTTAGGAGGAGCTCATGTGTCATTCAGGGAAGCTTAGCTTCCCCATAATTCGCACCCTTACAAAGTCAATATGAACATAAGGGAGTCATAACCGTTCATAAAAGGAGTCGTAAGATGTGCCAAAAAAACAGGAATGTACAATAAAGTGGAGGTACAGCAGGGTTGGAGGGAGAATGGGTCTTTCGGAGTACTTGAGTAATATAAATACTCAACAAGTGCTTGAGTACGAGTACACAGGCTCAGTCGGGGTTTAGTCTTATCCACTCCCCACCTGGAATTAATTCTGGATGGAAAACTATCTTATgttccttttcccctctcttccacctctctcgcACCAATGTttggttattattattactacgcGATAACCGACTCCCGTcccagtccctctcctcctcccccatcctccctcctccctccactcccagCTCTCCTGTCCTGAGTTGGGAGGGGCCTTTCCTCATGTAGGCTCCCCCAGCAGGGATAGCTGGGGGCGGAGCCTGGGCAGGCTGGGGAGCTGCCCTGGGGAACTGCCTGGCATCTAGCAGGTCTTTATACTGGATCTCCGGCCTGATCATCCTCAGACAGGCCTGACGGGTAGCGTTGTCCAGCCCAGGCTGGAGCTCATATCCTAGGATCTTCACCAAACCGCTCTGGAAGGGCCTGATGTTCTTGTCCCGGATGCGGCTTGCCTCTACCGGCCTCCCGCCTTCCCTCAGGCAAGCTTTGGCCAGCAACTCCCGGCGGGTCCGGAGTAGAACGACCTCTTGGTCCATTCTGGCTCTCCCAAAGCGATCCACCTCGTCCCAAAAGGAGCGGTTGAATGCCTGATAGAGGTGCCAGTCCAGGGCGTTCCACTCCCGGAGCTTCTGCCGTTGGTTGTCTGTGAGAGCCATGGCGGGGTGCTGAGCAGCGGCCGCTTTATCCACCCAGGAGCTGCCTCCATTGGACTTTTGCTGCCGGGCGTTCAGGCTAAAGGAGACGACAGCGTCCAGAGGCCAACAGAGGGCGTGGCGGAGCAGTACCATGGATTCGTCAAAGTGCTCCGAGACCAGGATGAGTTTGAAGGCACGTCGAATGGCCACTTCACCTCGTTGCGTCAGTGTGGTGGAGAAGTTGGCGTTGTGGTCCAGGCCGAAGTCGTACCACAGCAGGTTGCGAGCGTAGTGGTTGTTACGGAGACGGGGGTCGTAGTACTTCTGGGGGTTGTCGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879271 lncRNA downstream 1736 12253227 ~ 12253750 (-) True G771765
TU879269 lncRNA downstream 4912 12250226 ~ 12250574 (-) True G771763
TU879268 lncRNA downstream 5272 12249939 ~ 12250214 (-) True G771762
TU879267 lncRNA downstream 5591 12249586 ~ 12249895 (-) True G771761
TU879265 lncRNA downstream 8575 12246512 ~ 12246911 (-) True G771759
TU879284 lncRNA upstream 3623 12302352 ~ 12302697 (-) True G771778
TU879286 lncRNA upstream 5195 12303924 ~ 12304267 (-) True G771780
TU879287 lncRNA upstream 5545 12304274 ~ 12304993 (-) True G771781
TU879288 lncRNA upstream 6271 12305000 ~ 12305239 (-) True G771782
TU879290 lncRNA upstream 10051 12308780 ~ 12309340 (-) True G771784
trnaw-cca-4 mRNA downstream 56708 12198707 ~ 12198778 (-) True trnaw-cca-4
trnas-uga-2 mRNA downstream 69773 12185632 ~ 12185713 (-) False trnas-uga-2
XM_021614669.2 mRNA downstream 102471 12147494 ~ 12153015 (-) True LOC110531459
XM_036987352.1 mRNA downstream 102476 12147494 ~ 12153010 (-) False LOC110531459
XM_036987357.1 mRNA downstream 110700 12126227 ~ 12144786 (-) False LOC110531465
XM_021614680.2 mRNA upstream 137611 12436340 ~ 12441768 (-) True sox19b
XM_021614681.2 mRNA upstream 170076 12468805 ~ 12479392 (-) True LOC110531476
XR_005053463.1 mRNA upstream 172247 12470976 ~ 12471118 (-) True LOC118966197
XR_005053466.1 mRNA upstream 174939 12473668 ~ 12473792 (-) True LOC118966200
XR_005053465.1 mRNA upstream 176778 12475507 ~ 12475649 (-) True LOC118966199
TU879101 other downstream 284132 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 366771 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 466917 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 478874 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 553903 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 695540 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 695540 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1291524 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1398450 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1681599 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile