RNA id: TU880553


Basic Information

Item Value
RNA id TU880553
length 1938
lncRNA type intronic
GC content 0.41
exon number 2
gene id G772857
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12939794 ~ 12942007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctccccactgtatatgcacttGTTGTAGACATCTAATACTTCATGAACAAGAGTATCCTAGATTATACAACAGCTGGGTTTAATCCttgatgctgattggttaatCCACATTCTAGCCACATACTAGCCACAAGCTACCACAgtctaaatctatgatgttaaaatgcctatttactctttTCCATCTCACAGCACAATCCATCAGCCCAGTCAGAgaagttataaacttgatctccccTATGataagcatctagacattatctcccatttctgttagactaacatttagttttcaacagtgcagatttgtataaaccttgctttctgtctctccgacatatgtaaaattgtttaaatttTAAACttcaatctccagctgtcccatagtaatgaacgtgtcgggagttgggatgagacagacaggcaggcagcttttctcagcctgtcgatggcatcatttttatggatacagtgcattcggaaagtattcagaccccttgaccacattttgttacgttacagccttattctaaaatgtattaaattatttccccccctcatcaatccacatACACTACccagtaatgacaaagcaaaaacagttttttttttgccaaaaaaaatgaataaacggaaatatcacatttacataagtattcagaccctttactcagtactttgtttaagcatCGTTGGCAGTGAATGCAGCCTaaagtcttcttgtgtatgacgctacaagcttggtacacctgtatttggggagtttcttccattcttctctgcagatcctctcaagctctatcatgttggatggggagcatcgctgcacagctattttcagatctctccagagatgtttgatcgggttcaaatccgggctctggctgggccactcaaaaacattcagagacttgtcccgaagccactcctgcattgtcttggctgtgaaaggaatcttcgccccagtctgaggtcctgagaactctagagcaggtattcatcaaggatctctctgtacttttctccattcatctgtccctcgatcctgactagtctcccagttcctgccgctgaaaaacatcccccatttccacagaggaactctggagctatgtcagagtgaccattgggttcttagtcacctccctgtccaaggcccttctcccccgattgctcagtttagctgggtggccagctctaggaagagtcatggtggttccaatcttcttccatttaagaataatggaggcaactgtgttcttggggactttcaatgcaaAAGACAGGTCTTtgtacccagatctgtgccagaacacaatcctgtttcgggaGCTCTACAGATCAATTCCatcaacctcgtggcttggtttttgctctcacatgcactgtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaattgcacttcccacaggtggactccaatcaagttttataaacatctcatggatggtctttggaaacaggatgcacctgagctcaattttgagtcttatagcaaagggtctgaattcttatgttaacctttttgggatagggggcagcattttcacttttggatgaatagtgtgcccagagtgaactgcctcctactctgtcccagatgctaatatatgcatattattagtagtattggatagaaactctgaagtttctaaaactgtttgaatgatgtctgtgagtttaacagaactcatatggcaagcaaaaaccggagaaaaatccaaccaggaagtgggaaatctgaggtttgtagtttttcaactcagcccctattgaagatacaggtCTTtggattcaataaaaaaaattcctgatcaatctacacacaataccccataatgacgaagcaaaaacgtTTTTTCTGTTATtaggtatttcattttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880489 lncRNA downstream 94040 12845531 ~ 12845754 (-) True G772803
TU880488 lncRNA downstream 94400 12845096 ~ 12845394 (-) True G772802
TU880484 lncRNA downstream 98909 12840210 ~ 12840885 (-) True G772798
TU880482 lncRNA downstream 101139 12837266 ~ 12838655 (-) True G772797
TU880435 lncRNA downstream 175073 12758490 ~ 12764721 (-) False G772753
TU880562 lncRNA upstream 21416 12963423 ~ 13012014 (-) False G772863
TU880563 lncRNA upstream 21416 12963423 ~ 13012014 (-) True G772863
TU880630 lncRNA upstream 137765 13079772 ~ 13084925 (-) True G772914
TU880641 lncRNA upstream 160022 13102029 ~ 13102298 (-) True G772924
TU880652 lncRNA upstream 169895 13111902 ~ 13112213 (-) True G772934
XM_021614696.2 mRNA downstream 63348 12856566 ~ 12876446 (-) True LOC110531492
XM_036987371.1 mRNA downstream 71503 12856566 ~ 12868291 (-) False LOC110531492
trnaa-ugc-29 mRNA downstream 286005 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_036987361.1 mRNA downstream 304566 12595885 ~ 12635228 (-) True LOC110531484
XM_021614686.2 mRNA downstream 356293 12566382 ~ 12583501 (-) False LOC110531482
XM_021614711.2 mRNA upstream 24126 12966133 ~ 12983100 (-) True ripk3
XM_021617078.2 mRNA upstream 70705 13012712 ~ 13014459 (-) True LOC110532921
XM_036989250.1 mRNA upstream 177990 13119997 ~ 13139049 (-) False LOC118966159
XM_021614714.2 mRNA upstream 269508 13211515 ~ 13217001 (-) True LOC110531504
XM_036989186.1 mRNA upstream 408113 13350120 ~ 13367152 (-) False LOC110531502
TU879101 other downstream 968440 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1051079 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1151225 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 1163182 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 1238211 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 52262 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 52262 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 648246 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 755172 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1038321 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile