RNA id: TU880563


Basic Information

Item Value
RNA id TU880563
length 2594
lncRNA type read_through
GC content 0.42
exon number 2
gene id G772863
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12963423 ~ 13012014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacttataattcactgtatcacaattccagtgggtcagaagtttacataaactaagttgactgtgactttaaacagcttgaaaaattcccaaaattatgtcatggttttagaagcttctgataggctaattgacataatttgagtgaattagagttgtacctgtggatgtatttcaaggcctaccttcaaactcagtgtctctttacTTGAttgaaaagtatctatatccacagtaaaacgagccctatatcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactacggtttgcatctgcacatggggacaaagatcatactttttggagatatatcctctggtctgttgaaacaaaaatagaactgtttggccataatgaccattgttatgtttggaggaaaaaggggaaggcttgcaagccaaagaacaccatcccaactgtgaagcacgggggtggcagcatcattttgtgggggtgctttgctgcaggagggcctggtgcacttcacaaaatggatggtatcatgaggtaggaaaattacgatgatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggttacaaatgagttttccaaatggacaatgaccccaagcatacatccaaagttgtgacaaaatggcttaaggacaacaagtcaaggtattggagtggccatcacaaagccctgacctctatgctatagaacatttgtgggcagaactgaaaaagcgtgtgcgagccaaggaggtctacaaacctgactcagttacagcagctctgtcaggaggaatgggccaaaattcacacaacttattgtgggaagcttgtggaaggctacccaaaacatttaatggcaatgctaccaaatactaattgagtgtatgtaaactgctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctgctattattctgacatttcacattcttaaaagaaagtggtcatcctaactgacctaagacagggaatttttactaggattacatttcaggaattgtgaaaaactgtgtttaaatgtatttggctgaggtgtatgtaaacttccgacttcaactgtatatcagtACATATTAAGCTTATAATCTTATATTAACACttctataaacacacacatcttTAAAGAATAAACCAACACCCCCTCCTATATATTCTTACATGCCTCCTCTCGGTATTCAAGCAGCGAGAGAAATTGGTTGTGACAGTGTACGGTATGAAACCcataggcaacacacacacacacacacacacacacctcgccaAAAATACCATCTGCCGCCGGATCCACCAGGGTGAACTGCAGGAGTCCTTACCCAGACTCCTCCACTCGAAGCGTTGAAGGTGTCCGCACTATTTAcagcacaaacacatgcacagctTTGGAGAAGGTGGAAGTAATCCCTTTCAATACTGATTCAGGGTTAGATTTGATGTAATCTCCCGAACAGTTGAGGTTATCATAGGGAGCAtagaatctgatcctagatctgtggtaagGTCAACTTCTATTATACAGTTACAGTGTCACCCTTATGATTACATTTGTGATCTGGGCCTGCATTCATAAAGTATATCAGAGTAGGGGGGTGGGGTGGTTCGATGCCAGCTGCCCATCATAGGGCTGGCTACCTGTCATCATCATCTTGCTCCAAGTAGCATTCCTCAGCGACTAGGCCATACCCCAAAACTATACAATAAAATGCCAGATTACATTCTGTCTCTGTTGTTCATTCAGTTAAGCCTGTCCTTGATTGATCTTTACCTACAAAGATTCCATTGTCTTTTATTACCTTTAGAACAATTATTATTTctatgtaattattattattatgtcattATTAGCATTTCATGCATCAAAGGAACTTGAATACGATCCACAATACATAACTACACAAGCATGACACCTACTGTATGATCTACAGTATCATTCATATGCTGGAGCAGTGTATAGAAAAAAGTCTTATGCAAAATGGTACCATTCAGGATTTTGTGATAAAAACTCCTCCTCCTTTGTGATACAAACTCCTCCTTTGTAATACAAAACTCCTCCCCCTTTGTGATACAAACTCCTCCTTTGTAATACAAACTCCTCCTCCTTTGTTATACAaactcctcctcagtctgtcttGTCCTCTATCTCTTTCAcaccctatcctctctctctctctctatatatgtctctcacgtcctctctatctatcccatCACTCACTTGCTTACCCATCTCTTATTCTCTCACTCCTATCTCCCCACATTCCTCCCcctcgtctctccctccccttcccccctcccttcttACAAAGGAAACACCAGAAACCCAGAGAAGGTGGAGTATTTCCATCCTCCCATCAGGTTCCCTCTCTCCAGTTTGAGATAAGCCTTATCTCCTCTCTCCATGGTGACCAAGCCAGCGTTGGTGGCTGCTTCCCTGGTCACGTCTTGGTCCCCGGCAAAGGCTGAGATGAACGGATGTCCATTTAAAACCAGACTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880553 lncRNA downstream 21416 12939794 ~ 12942007 (-) True G772857
TU880489 lncRNA downstream 117669 12845531 ~ 12845754 (-) True G772803
TU880488 lncRNA downstream 118029 12845096 ~ 12845394 (-) True G772802
TU880484 lncRNA downstream 122538 12840210 ~ 12840885 (-) True G772798
TU880482 lncRNA downstream 124768 12837266 ~ 12838655 (-) True G772797
TU880630 lncRNA upstream 67758 13079772 ~ 13084925 (-) True G772914
TU880641 lncRNA upstream 90015 13102029 ~ 13102298 (-) True G772924
TU880652 lncRNA upstream 99888 13111902 ~ 13112213 (-) True G772934
TU880678 lncRNA upstream 114314 13126328 ~ 13132967 (-) True LOC118966159
TU880667 lncRNA upstream 185490 13197504 ~ 13199073 (-) True G772946
XM_021614696.2 mRNA downstream 86977 12856566 ~ 12876446 (-) True LOC110531492
XM_036987371.1 mRNA downstream 95132 12856566 ~ 12868291 (-) False LOC110531492
trnaa-ugc-29 mRNA downstream 309634 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_036987361.1 mRNA downstream 328195 12595885 ~ 12635228 (-) True LOC110531484
XM_021614687.2 mRNA downstream 379922 12566382 ~ 12583501 (-) False LOC110531482
XM_021617078.2 mRNA upstream 698 13012712 ~ 13014459 (-) True LOC110532921
XM_036989250.1 mRNA upstream 107983 13119997 ~ 13139049 (-) False LOC118966159
XM_021614714.2 mRNA upstream 199501 13211515 ~ 13217001 (-) True LOC110531504
XM_036989186.1 mRNA upstream 338106 13350120 ~ 13367152 (-) False LOC110531502
XM_036989187.1 mRNA upstream 338106 13350120 ~ 13367176 (-) True LOC110531502
TU879101 other downstream 992069 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1074708 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1174854 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 1186811 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 1261840 11698399 ~ 11701583 (-) True LOC110531452
TU880902 other upstream 578239 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 685165 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 968314 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 1237387 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1712040 14724054 ~ 14724522 (-) True G774427

Expression Profile