RNA id: TU880578


Basic Information

Item Value
RNA id TU880578
length 2112
RNA type TUCP
GC content 0.55
exon number 2
gene id G772877
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12994269 ~ 12996410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAACGTTGCTGCCGTCGATAATGACCATCCTGAGTCCCGGGTCTCCTGGTTGGTCGGTCAGCTTGAGGTCAAATGGAGTCTGGAGGCCTTCCATGAAGCGCTGTTGCCCTGTCACCACAGCCCCTGCTGCCATGGTCGGGAGACCTCGTCTATCAACAGCCACCGCTGTTAGGGCTGGGAGATCCCTTCCCTCTACTGCTAGGGGAAAGAGACCACGTTTCTCCTTCGCTCTGGTTGTTGAGGAGTTATTCATGGTAAGGGTATGGGGTAAGGTGGTCGGTGGTGGCTGGGTGGGAGGGTAAACAAGTTGATGGGGAAATAAGAGAGGGTAGGTGGGTTGTGGGAGTAATGTGTTGGGGTAGGTGGGTTGTGGGGATAGTGTGTTGGGGTAGGTGGGTTGTGGGGGTAGTGTGTTGGGGTAGGTGGGCTGAGGCGGCCCTGTGACTAAAGGGGGGCTGGCTCGAtggggggtgtgtgtctgtgtgggattCTTCTGGTGACTGTGAATCAGGAACGGAATCTGGTTTGTCATGGCATTCCATTGAGCCAGATCTGGTTCAACCTTAACTGTACCATCGCCGATTTGGTTCGGCACGGTCACTCCTACCTCATTGGTCTTCCTTTCACTCTTTCCTTTCACAAtctttctttcttctcctctcttctcagtAGCAGTGGACTGCGGTGCTGgtgcctccatctctctacctctctcctccttcctgtctCCTGCTCTGTCCTTTCTCTGTAGCTCTGAGACAGCCTCATCCACCTCTCTTGGTTCGTCTCGTACCTGGTCCTGGGATGCAGcttctgtctctctggctctctccctctgtagctcCAGGAGTAGCTGGCGTGTGGACAGTTcaggtaacatactgtacacttcTGCTACCTTCTCCTCTGTGTATCCACAACTGGCTGCGGCCCTCTTCACAACTCCCAGGAAAAAATCCTCCTCGTTCCCCCCTTCACCTCCCTCCATGCCGCCCTCGcccctctccctgccttcctTCAGTGAATCCTCAGACAGGTTAGCGGTAGACCCTCCACTCTCCCTGccttttctcccctcctctctactccccgcCCCTTCTTCCACACCTCCCTCCAGCTCcactcccatccctccatctatactgcttctctttcctctcactcCTTTAgcttccctctcctctacctctgtgTGCTCCATCTCCACTGGGTGGTTCATGGCCAGACCGGTCCGGTCATGTTCTTGCTGGACCAGGTCCAGAATCTGGGAGACTTCTCTGGGTCCGGTCCGGGCCAGGACCCTCATTACCACATCTTCTGCATAGCCCATAGCCGTGAAGAACTTCAGCAAGAGCCCaaactcctccctactccctactgacaacatctccccctctccttcctccccctgttCTTCATCCTCTACCTCCTGTTGGGAACATCCTTGCCCCTCCTCCTCGGTTTGATGGAAAGAGTGGAAGATGGGAAGTCGAGGTGCTGCGtctttctctatcgctctctttgACCAATCTTTGCCCATCTCTCTTTCTTGTACATGTAAGCTAGTGAACGTCTTTTGTTGAGAAAGCTGCCCAATATTCCGTAGACCAGGGTCTTGGTTGTGGGTGGAATTTACAGGAGGTTTTCTCCTTGATGTGGAAATCCCCTGAATTCCCTCTATGTCCCTAGCCTCTCCAGCTCTGGTCCCTACTCTGGTATCCATAAGTTTTAGTATGTCCAAGCCTGACTGGTTGTCCCATCGTCTCTGGCTATCAGTGTCCATTAGACCCGCTCTGTCTCTAGACCCCCCAAGACTGAGGTTCGAGCCCCCAGGACCGGGGTTGGATCCCAGCCCAGACTCCCTCACCAGATCCAGTAGAGTCTCCTTCACCACCCCTGGTAGCACCAGCAGATCCAGAGTGTGCctgtcctcccatctctccaccaGGGATTTGAAGGCCCGACGGGAATCCAGGGTCTCGCCTGATCCTCTGTCGCCAGGCTCGGTTCTTCGTCCCTGGGTGACCTCGTAGTTCTTCACCAGGTCTGTGATGAGGGAATAGGCCCTGACCACTGGTTCTGCCAGTCCTGAGATGAGTAGGAAGCCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880553 lncRNA downstream 52262 12939794 ~ 12942007 (-) True G772857
TU880489 lncRNA downstream 148515 12845531 ~ 12845754 (-) True G772803
TU880488 lncRNA downstream 148875 12845096 ~ 12845394 (-) True G772802
TU880484 lncRNA downstream 153384 12840210 ~ 12840885 (-) True G772798
TU880482 lncRNA downstream 155614 12837266 ~ 12838655 (-) True G772797
TU880630 lncRNA upstream 83362 13079772 ~ 13084925 (-) True G772914
TU880641 lncRNA upstream 105619 13102029 ~ 13102298 (-) True G772924
TU880652 lncRNA upstream 115492 13111902 ~ 13112213 (-) True G772934
TU880678 lncRNA upstream 129918 13126328 ~ 13132967 (-) True LOC118966159
TU880667 lncRNA upstream 201094 13197504 ~ 13199073 (-) True G772946
XM_021614711.2 mRNA downstream 11169 12966133 ~ 12983100 (-) True ripk3
XM_021614696.2 mRNA downstream 117823 12856566 ~ 12876446 (-) True LOC110531492
XM_036987371.1 mRNA downstream 125978 12856566 ~ 12868291 (-) False LOC110531492
trnaa-ugc-29 mRNA downstream 340480 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_036987361.1 mRNA downstream 359041 12595885 ~ 12635228 (-) True LOC110531484
XM_021617078.2 mRNA upstream 16302 13012712 ~ 13014459 (-) True LOC110532921
XM_036989250.1 mRNA upstream 123587 13119997 ~ 13139049 (-) False LOC118966159
XM_021614714.2 mRNA upstream 215105 13211515 ~ 13217001 (-) True LOC110531504
XM_036989186.1 mRNA upstream 353710 13350120 ~ 13367152 (-) False LOC110531502
XM_036989187.1 mRNA upstream 353710 13350120 ~ 13367176 (-) True LOC110531502
TU879101 other downstream 1022915 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1105554 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1205700 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 1217657 11759238 ~ 11776612 (-) False LOC110532912
TU878914 other downstream 1292686 11698399 ~ 11701583 (-) False LOC110531452
TU880902 other upstream 593843 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 700769 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 983918 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 1252991 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1727644 14724054 ~ 14724522 (-) True G774427

Expression Profile