RNA id: TU880630


Basic Information

Item Value
RNA id TU880630
length 562
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G772914
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13079772 ~ 13084925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGTGTGGCAGTACTGTTTGAGACGACCAGGTGTGATGTCCAAGTCGTCATAACACTCTAGACACTCCCATTCTGCTACTGCCTGGCAAATACTGCACTGTCTGAgcgctagagagaggggggaggagagagagaTGTCATCCAGCAGGTCTGTGATGTCGATGGTGAGTGAAGGCAAGATGGCGTCAAACATCTTGAAGTCCTTCCCAAACCTAGGCATGAGGAGGGGGAGGCAGGAAGGGGCCTGGCGGAGGGGAGAGTCAATCCATCAACACATCAACGTAGAGTTTGTTTGTGTATCTACTATGTCTTCTTGTGTTGTTACCTCAGCAAACTTTAGTCCCGCGTGGAGAAAAGATGTCTCTAACAGAGTCTGAACACTGGCCACCCTCATGAGTActgcaggggaggagagagggatgggacagagggacggagacagagggacaggggaagagggagagaggggaacggaTGGAGGGAAGAGCTGGTAGAGGTGACACTCCTGAGGCTGCTGCTTCTGTGTCACTGACCTGAAAGGAACGAGGGGGAGCAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880562 lncRNA downstream 67758 12963423 ~ 13012014 (-) False G772863
TU880563 lncRNA downstream 67758 12963423 ~ 13012014 (-) True G772863
TU880553 lncRNA downstream 137765 12939794 ~ 12942007 (-) True G772857
TU880489 lncRNA downstream 234018 12845531 ~ 12845754 (-) True G772803
TU880488 lncRNA downstream 234378 12845096 ~ 12845394 (-) True G772802
TU880641 lncRNA upstream 17104 13102029 ~ 13102298 (-) True G772924
TU880652 lncRNA upstream 26977 13111902 ~ 13112213 (-) True G772934
TU880678 lncRNA upstream 41403 13126328 ~ 13132967 (-) True LOC118966159
TU880667 lncRNA upstream 112579 13197504 ~ 13199073 (-) True G772946
TU880721 lncRNA upstream 142038 13226963 ~ 13227177 (-) True G772997
XM_021617078.2 mRNA downstream 65313 13012712 ~ 13014459 (-) True LOC110532921
XM_021614711.2 mRNA downstream 96672 12966133 ~ 12983100 (-) True ripk3
XM_021614696.2 mRNA downstream 203326 12856566 ~ 12876446 (-) True LOC110531492
XM_036987371.1 mRNA downstream 211481 12856566 ~ 12868291 (-) False LOC110531492
trnaa-ugc-29 mRNA downstream 425983 12653719 ~ 12653789 (-) True trnaa-ugc-29
XM_036989250.1 mRNA upstream 35072 13119997 ~ 13139049 (-) False LOC118966159
XM_021614714.2 mRNA upstream 126590 13211515 ~ 13217001 (-) True LOC110531504
XM_036989186.1 mRNA upstream 265195 13350120 ~ 13367152 (-) False LOC110531502
XM_036989187.1 mRNA upstream 265195 13350120 ~ 13367176 (-) True LOC110531502
XM_036989160.1 mRNA upstream 357529 13442454 ~ 13472851 (-) False sb:cb1081
TU880578 other downstream 83362 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 83362 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1108418 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1191057 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 1291203 11785781 ~ 11788569 (-) True LOC110532912
TU880902 other upstream 505328 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 612254 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 895403 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 1164476 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1639129 14724054 ~ 14724522 (-) True G774427

Expression Profile