RNA id: TU880904


Basic Information

Item Value
RNA id TU880904
length 3578
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G773164
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 13654981 ~ 13658885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaatgctgtgctctttaattgcaccaacgcaccacagggtgctcacaataaTAACGGCCCCAAACACGGGGAATGAAAAATGTACAACTGAAAAATGCACGACCAGGCACTAACACGTTCCTCTACTACAGAGCCGAAGATTACAatgaataatcccgcacaacaaacaGGCGGCAGGCTGTCTAAAGAAGCCCAACTAATCATCACAAACAGGTGCtaccaataaacatacaaggagggggaagTACCCAGTCATCCTTCTTCTCCACATTCACCTTCCAGTAGGCCCTCCAAGCACGGCCCATAATGCCCTGCACATAGGGATCTTCATCAAACATCTTCTCACTACACAGTCTCTGTGGTGTTTCCTTTATCCAGCTTACTGTTTTCCCATCTATCAGTAGGTTAGGGTGAGCTGTGTCCACATCCAGAGTTACATCCACTGAGGAAAGAAAACACATACATAATGTTGAAGAAACATTTTTCTTATTTTGATCTTAAAAACCTCTAAGCCGTTGGGGTGGAGGGGGAAgggtactaagctaacatatggcaTTGTTTTAAGACGGtaataccatggatcatttagctgttTGATTTAGAGTTGTAGGACCCATTTAAAAGGTACAACAATTAGAAATcatatttgattaaaaaaatacccatctcaattgggttgaggtcgggtgattgtggagaccaggtcatctgatgcagcactccatccctctccttcatatagcccttacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaaatataGTCcctctaagcgcaaaccagatgggatggcgtatcgctgcagaatgctttggcagccatgctggttaagtgtgacttgaattataaacaaatcactgacagtgtcaccagcaaagcacccccacacctcttcctccatgcttgcAACTTCACATTtgttaaacctttatttaactaggcaagttaattaagaacacattcttatttacaatgactgcctaccggggaacagtggtttaactgccatgttcaggggcagaacgacagatttttacattgtcagctcggggattcgatccaaaaacctttcggttactggcccaatgctctaaccactagggtgcCTGCCGACCcacacatgaggagatcatccattcatctactctgcgtctcacaaagacacggcggttggaaccaaatacCTCAAATTtgaaatttgaactcatcagaccaaagaacagattttcaccggtctaatgtcctttgcacgtgtttcttggcccaagcaagtttcttcttattattggtgtcctttagtagtgcttcctttgtagcaatttgacaatgaaggcctgattcacgtagtctcctctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaaggatgtatttgggctgcaatttctgaggctgataactctaattaacttatcctctgcagcagaggtaactctgggtcttcatttcctgtggcggtcctcatgagagccagtttcagcgcttgatggtttttgcgactgcacttgaagaaactttccaaattcttgacattttccagattgactgaacttcatgtcttaaagtaatgatgaactgttgtttctctttgcttatttgacctgttcttgccataaaatggacttggtcttttaccaagtagggTTTTCTTCTGTATAcgacccctaccttgtcacaacacaactgaatgtctcaaatgcattaagaagaaaataaattccacaaactaacttttaacaaggcacacctgtttattgaaatgcattccaggtgactaccttatgaagctggttgagagaatgccaagagtgtgcaaaggtgtcatcaaggcaaagggtggctactttgaagaatctcaaatctaacaTGTATTTTGactggtttaacacttttttggttactacattattccatgtgtgctatttcatagtttagatgtcttcactaatatattacaatgtagaaaatagtaaaagtaaagaatcACCCtggagtaggtgtgtcaaaaacGTTTGACTGTTGATTAGAAAACGTGACAAAATATGAATAGCCACATGTAAGAAAAATGATAGTAAATATCTTAGTACCTTCATGTAACTTCTCAtctgaaaaaaaaaataagaaattgaAAACAGAGAAGTGCAATAGCAAAGCACTGATGCATCTACAAGTGAATCAAAAATAATTCAAATATATTAACCTGGAAATACACAGTAAATAACAGGTATTCCTATAATGCTGTACTTACTGTATGGTATATCTTGATTTAAATGTATGTCTTATGAGTGTGCATGTATGAGTGTGTAGTTTACATTCCTTACAGTACCTTGCTTACGGGGTGATGTGGTAGACGTCTTTGGCTGTTTAATAACTGCGGTGTTATATgaatcatgtaaaaaaaaaaaagacttccTCATAATTTGATAAAACAGTTTTCATCTGATATACTTAAATCCTAGAAATCATATTTTAAATGTACATGGGGATTCTCTACTTTTGAAGTAAAAAAATGTTCACTATAGTTATTTTGGATGTCTGCTCCTGTACAACGTGTTGTTCAAATCACATAGTTATGACCAAATGTCCAAAGATATTACTTTGCTCTTTTGAACTAGACAATTACTAAATCCACCATTATGATTTTAATGCAGCAAATACAATCAACTTAATGTACCTGTGTCGTCTTCAACAGTTCTTCTACTGACAAAGCCACCTGTACAAGGAAGAAATTGCAGTGTAATCGTGATCTGATaaagagatatacagtatgtactttcTTTAGTTCAAAATGTGTGCATCTCTTTCTTCATACATGAGTATATTAGTAATAGTTGATTAATGATATTAATTAGGGTGGGAGATATATTTTTGGGTTATACATTTctttttttacattattaaaaggaaaactccacccaaaactATCTTTTAGTATTTATTTCATTAGTaaattgttgatatagtcccaaaatgttttataTGTCAGCAAtcgttttcaagatatgtaactttctaAACACAGACATCTGGCCTGCATTATGTAATTTGCATCACATGATGGAAAATGCATCATATGGGatagatttctgtattttgaaagttacatttcttaaacttgattgctgacatatagaacattttgggactatatcattTTTGGGACTGAAATGTATAACCCCAAAATATATCTCCCTCCCTAATTggctttttttattttaatagtgTACAGTTTAATCTGTGCAGCAGATTTACCCATTCTAGCTAACAGTAGATGGGGACCAAGTTCAGAAACAGCTGTGTACTGTATTATTCTTCTGTGGATAAAAACACAGGGAAGAAGTGAGGAGAGATACTGCTAAATTAAACAAGCAGTAGGACAAATGACAAAAAATTAGCTAAGGCAAAACAACTACAAGTTTTGCACTAAgtagagacatacagtgccttcagaaagtgttcacaccaagttgattttttccacattttgttgttaaagcctgaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU880905 lncRNA downstream 51923 13601083 ~ 13603058 (-) True G773165
TU880941 lncRNA downstream 96799 13557972 ~ 13558182 (-) True G773200
TU880927 lncRNA downstream 116326 13538438 ~ 13538655 (-) True G773187
TU880923 lncRNA downstream 122812 13531968 ~ 13532169 (-) True G773183
TU880921 lncRNA downstream 125116 13529598 ~ 13529865 (-) True G773181
TU881061 lncRNA upstream 130083 13788968 ~ 13843395 (-) True G773313
TU881156 lncRNA upstream 248861 13907746 ~ 13907952 (-) True G773390
TU881165 lncRNA upstream 256654 13915539 ~ 13916036 (-) True G773395
TU881132 lncRNA upstream 259113 13917998 ~ 13943722 (-) False LOC110531536
TU881133 lncRNA upstream 259113 13917998 ~ 13943722 (-) False LOC110531536
XM_021614735.2 mRNA downstream 11862 13625181 ~ 13643119 (-) True LOC110531522
XM_021614726.2 mRNA downstream 119502 13488039 ~ 13535479 (-) True LOC110531518
XM_021614725.2 mRNA downstream 175617 13442454 ~ 13479364 (-) False sb:cb1081
XM_036989161.1 mRNA downstream 175617 13442455 ~ 13479364 (-) False sb:cb1081
XM_036989162.1 mRNA downstream 175617 13442456 ~ 13479364 (-) False sb:cb1081
XM_036989179.1 mRNA upstream 9041 13667926 ~ 13673035 (-) False LOC110531523
XM_036989171.1 mRNA upstream 9041 13667926 ~ 13676434 (-) False LOC110531523
XM_036989174.1 mRNA upstream 9041 13667926 ~ 13677335 (-) False LOC110531523
XM_021614738.2 mRNA upstream 9041 13667926 ~ 13713484 (-) False LOC110531523
XM_036989177.1 mRNA upstream 10375 13669260 ~ 13676477 (-) False LOC110531523
TU880902 other downstream 62893 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 658571 12994269 ~ 12996410 (-) False G772877
TU880579 other downstream 658571 12994269 ~ 12996410 (-) True G772877
TU879101 other downstream 1683627 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 1766266 11871488 ~ 11888715 (-) True G771540
TU880908 other upstream 38294 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 321443 13980328 ~ 13987582 (-) True LOC110531538
TU882202 other upstream 590516 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 1065169 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1579173 15238058 ~ 15253973 (-) True G774562

Expression Profile