RNA id: TU882109


Basic Information

Item Value
RNA id TU882109
length 7092
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G774181
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14114285 ~ 14123191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGAACAATATTTATTTTAGATTTGTCAATagttgcaacaacaaaaaaaacatacactGAAATTCATTTAACAACAATGTCAAAGAGAAAAGACATGGAAGTCATCTCccccaaaataaaaaatacacagTTCAGCTGATTTTATGATCTTATCAAATAACTCCTTTTCAAGAGCCTCGTCCCTACGGACCTGGATGATGAGTTCAGCCACTTTCTTCAGCAGTCTGGTTACCTCTGCTGCTGTACTCAGACCTGTAGTTACCGTGGATGTGGAGGAGGACAGTTCCTCTAATGTTTGAACATTTGTTTGGATTTTTTCCAGGCATTCAACAATTGGTTGAATACTTTTATTGAATTCTTCTGCACCATTCTTAATTTTCTCTTGGCCATTGTTCTCTAACAACATTTTGACGATGTTAGAAGCAGTGATAGCAGCTCCACTAACTGCACCCATGACTGCCCCTGCAACGAGCAGGGGGGTGCCCCCAGTAAATATAGTTAGAACTATTCCCGCTACCCCAGCTACACCAAATCCAGCCCCAACATTCCTGCCTGTGGCAGCATTGTCCTGTATCCTCTTAATAATAGCAGCTTTCTGTTTAAAGTAATTTGCTCTTGCTTGTAAATTTGTTCTCTTTCCTTCAAAGAGTTTCTTGAATGACTTGATGTCATGCTTGAGGTTTCCTAGTTCATTTGACACTGGAAGAAATATATATAATTGTCAGACAATGTTATCCAGAGGAAAAACACAAACCCATAACCCACCCACATATTAACGTTTCTCATTTAATATCTCATTCACCGGTCACTTAACTAATTAACTGTTAGTTAAGTGATCTAGTGTCGAAAAACATCTTAATTTAACCAAGTTTCAGTTATGCGTTCACATACACTCCCCTtcatatttatttggacagtgaagctaaaatgtTTGTTAATTTGGTACTATATTTGAGATCAGCATAGAATGTCACCACATATTTTTTTACCGATTAGAAATGAATGCACTTTATTTATCTAGTCCCCCttttgaaggtgtcataagtatttggtcaaattCACtcatacacagagtgtacaaaacattggtTAGGgatattcctctagtggtgtgggggctgtgctttggcaaagtgggtggggttatatcctgtctgtttggccctgtccgggggtgtcatcggatggggccacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgttggggggctagggtcagtttgttatatctggagtatttctcctgtcttatccagtgtcctgagtgaatttaagtatatttttctctctctatctccatatCTCTCTACCTATCTATCTACGACATTGCTGATGAGTACTttctggccatgctgctgctccagattattattatttgaccatgctagtcatctatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgttccgcactttgagatatcagctgatatacgaagggctttactaaaaatacattttgattgattgattttcaaCACCtgctttccatgacacagactgaccaggtgaaagctatgatcccctattgatgccacttgttaaatacacttctgtcagtgtagatgaaggggtggagatcagttaaagaaggattttcaagccttgagacatttgagaAATGGAATGTCAGCAGATTGTCAATGACCTGTATGTAGGCAGGACTGGGACTATCAGATAGGATCTACACcactgctcttttctataacctgtatgtAGGAAGGACTGGGGTATGATCAGATAGGATCTACACCACTGCTCTTTTCTGTAACCTGTAGGTAACTGACGGGCCacacaaattgggatatgggggaggggaatggacATATGCAAATGTGGTATTAGCATTTGAATACcgtgtgtagtacagtattctacagtatacatttttttttaatagtaAGCGCTACATGATAGTGGGATAGTAcagagtgtagtatagtatactacagtttacagCAGAATACTATAGAATTCTATATATAGTAAGTACTAAAGTATTCTACAGAAACTGTATTATTTTTCATGTGGGTTGAAAGCTTCATAAAGTTAATAAACATTACTTACTATCATGGCCAATTTCCTTGCTACGTCTGTTTCCAGCAGTTGCCATATCTGACTTTGTTAATTGTCTTCCTCTTAGACGGTTCACTAGAAGCTGCAGATCTTATTTGTGTGCTGGAAAGGGAGAGGCTgtagaaacagaacacaaggaTGAATCATTAGACAGGATGATGTTAGTGGACCTAAGTGTTATCAAAGTGTAGCTATTTATAGTGTATTTGAAGGCCTACAGTTCCTTCGGAAAGTAtatagaccccttgacttttcccacattttgttacattttagaataaggctgtaatgtattacattgtttttcccctcatccatctacacacaataccccataatgcataAAGCagaaactgtttaaaaaaaatagttgcaaatgtatttaaaacaaaacaaacaccttatttacataagtattcagaccctttgctatgagactcgaaattgagctcaggtgcatcctgtttccattgataatccttaagatggttctacaacttgattggagtccacctgtggaaaatgtaattgattggacatgatttggaaaggcacacacctgtttatataaggtcccacagttcacagtgcatttccgagcagaaggacaaccatctctgcagtactccaccaatcaggcctttattgtagagtggtcagatagaagccactcttcagtaaaaggcacatgacagcccacttggagtttgtcaaaaggcacctaaagactctcagaccatgagaaacaatattctctggtctgatgaaaccaagattaaactttttggcctgaatgccaagcattaaGTCTgaagaaaacctggcaccatccctacggagaAGGGGgttcagcgtcagggactgggagactggtcaagatggagcaaagtaaagagaggtccttgataaaaacctgctccagagcactcaggacatcagagtactgagtgaagggtctgaatacttatgtaaatatgatatgtttttttatttgtaatacatttttagTTCAATTGaactaaaaacctgcttttgctttgtcatttttgggtattgtgtgtagtttgatgagggcAAAAAAactattcaatcaattttagaataaggctgtaatctaacaaaatgtggaaaaagtcaaggggtctgaatatgtgCTGCGTATTTATACTGaataaaatataaactcaacctgtaaagtgctggtcccatgtttcatgggctgaaataaaagatcccagaaatgtttcatgcAAAGcgaatttctctcaaattttgtgcacaaatttgtttacatccctgttggtgagcatttcgcctcaaaaattgaaagaatgtggcaccacaacaaacctgccaagagtggGCCGCCCacaaactcacggaccaggcaaggagggcattaatcagagaggcaacaaagagaccaaagataaccctgaaggagctgcaaagctccacagcggagattggagtatctgtccacaggacgactttaagctgtacactccacagagctgggctttacggaagagtggccagaaaaaaagccattgctttagAAAAACATAAGCAAACACATATGGTGTTCacaaaaaggcatgtgggagactccccaaacatattgaagaaggtactctggtcagaatAACATTtatctttttggccatcaaggaaaacgctatatcTGGCggaaacccaacacctctcatcacagtgaagcatggtgctggcagcatcatgctgtggggatgtttttcatttgcagggactgggaaactagtcagaattgaaggaatgatggatggtgctaaatacagggaaattcttgaggggaacctgtttcagtcttccaaagatttgagactgggatggaggttcacctttcagcaggacaatgaccctaagcacactgctaaagcaacactcaagtggtttaaggggaaacatttaaatgtcttggaatggcctggtcaaagcccagacctcaatccaattgagaatctgtggtatgacttaaagattgctgtacatcagcggaacccatccaactagAAAGggctggagcagttttgtcttgaatgggcaacaatcccagtggctagatgtgccaagcataaacagacataccccaagagacttgcagctgtatttgctgcaaaaggtggctctacaaagtctTGACATTgctggggtgaatagttatgcatgctcaagttctgtttttttgtctcatttcttgtttgtttcacaattaaaaatatttttcatcttcaaagtggtaggcatgttgtgtaactcaaatgatacaacccccacccccaaattctattttaattccaggttgtaaggcaacaaaatagtaaaaatgccaagggggtgaatacttttgcaagccactgtatctaGCACGTTGTTCTGTCAGGCATCAGGTAGTAttgtttgtttctttgttagaagcttctcttgttttgtattaGTTATCCTTAAAGTCACACTGCACTTGTTTCCTAACTCCCTGTGTCTACGTTACAGAATACTACCTCTCAAAATATTGAAGCGAGCAGAAGAGTTCTGGAACGATGCCCACGTGAGGCTCCAGTGTTACGTCCGCCGTCAGAAGAAGCAGGCAGattgccaccgcagtgaggctccAGTGTTCCGTCAGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGCCCGCCGTCAGAAGAAGCAGTCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGCCCGCCGTCAGAAGAAGCAGGCAGattgccaccgcagtgaggctccAGTGTTCCATCCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCTGTCCGCCGTCAGAAGAAGCAGGCAGATTGCCATCAGAGTGAGGCTCCACTGTTCCGACCGCCGTCAGAAGAAGCAGGCAGATTGCCACTGCAGTGAGGCTCCAGTGTTCTGTCCTCCGTCAGAAGAAGCAGGCAGATTGCTATCGCAGTGAGGCTCCACTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCAGTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGattgccaccgcagtgagGCTCCAGTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGattgccaccgcagtgaggctccAGTGTTCCGACCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGattgccaccgcagtgaggctccAGTGTTCCGACCGCCGTCAGAAGAAGCAGGCAGattgccaccgcagtgaggctccAGTGTTCCGACCGCCGTCAGAAGAAGCAGGCAGATTGCCATCACAGTGAGGCTCCACTGTTCCGTCCGCCGTCAGAAGAAGCAGGCAGattgccaccgcagtgaggctccAGTGTTCCGCCCGCCGTCTGAAGAAGCAGGCAGattgccaccgcagtgaggctccCGTGTTCCATCTTGGTGATCGTGTCTGGCTCTCCACTAGGAACCttccactctgcctgccctgtaaGAACCTGAGTCCCCGGTTTGTGGGACCGTTCAAGGTCTTCTGGAGGGTCAATGAGGTGACATTTAGATTACAGCTCCCCGCTAACTATCGGAtccctcctcaggccggtggttcaTGGTCCCCTGACTGAGGCCGTCCACCACGACAGCCCTCCATCTCCCCTGGACATCGAGGGAAGCCCTGCCTATGCCGTCAGATCCCTCCTGGACTCCCGATATCGTTGGGGTTGgctccagtacctggtggacCGGGAGGGGCACAGTCCAGAAGAGCGGTGTTGGGTACCGATGGACAACATTCGAGATACATCTAAGATTTCTACCTTTGCTGACCGAACTGCTCCTCGCCCTCGGGGCATCCCTCTAATCGGTGTACTGTCACGTCTATTCCTGCTCGTCGTCGCCGGTCCTGGCAGCCCATCATAAAGAACACCTGCGCCCTATCATTAGACACACCTGGACTTAATCCCTACCCTGATTACTATTCCTATATCTAGTACTCTGTAACTTTTCTAAACCAGGCTGTATTGGTTCTGTTTTCATGTCAGACACTATTCTTGTTTTGTGTCGCTCCATGTTTGTTAATGTTAAACTCAccacctgcacctgcttcctgactcccttcgtCTCCATTACAGGTGTTATGTTAAAGTTACAATCTGCTATATTTACTGCTGTTCAAAGGTAATTTCAATAAATAATCTCAGTAGCCTACTACAAATGTGTTAACCCATCACACAGACGCAGACATATGCATAAGATAGCTAAAACTGACTCCATTGCAAACAGTAAAAGTATCACATAAACACACTATTGAATGATATACCCTATGTCATTTCCCCACAACAGCACCAATGATGAACTCCTGTAAAAACACTCAGCTGAATTACTGCAGGTCTGGTGGTGGTAGAACATCCAGAGGTGATGATGGTTGAGGGTTGTCTGAGGACAGCTTCAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882087 lncRNA downstream 11469 14075965 ~ 14102816 (-) True G774159
TU882086 lncRNA downstream 39688 14074355 ~ 14074597 (-) True G774158
TU882057 lncRNA downstream 88439 14022694 ~ 14025846 (-) True LOC110531549
TU881139 lncRNA downstream 112267 13988898 ~ 14002018 (-) True LOC110531539
TU881176 lncRNA downstream 176912 13936934 ~ 13937373 (-) True G773405
TU882174 lncRNA upstream 188269 14311460 ~ 14331902 (-) False LOC110531554
TU882229 lncRNA upstream 213328 14336519 ~ 14336804 (-) True G774281
TU882233 lncRNA upstream 217069 14340260 ~ 14340725 (-) True G774285
TU882242 lncRNA upstream 237764 14360955 ~ 14361175 (-) True G774294
TU882191 lncRNA upstream 248155 14371346 ~ 14371628 (-) True G774246
XM_036989212.1 mRNA downstream 26010 14070035 ~ 14088275 (-) False LOC110531545
XM_021614759.2 mRNA downstream 26010 14083846 ~ 14088275 (-) True LOC110531545
XM_036989256.1 mRNA downstream 69772 14042284 ~ 14044513 (-) True LOC110532929
XM_036989219.1 mRNA downstream 74556 14033558 ~ 14039729 (-) True LOC110531540
XM_036989204.1 mRNA downstream 83501 14028919 ~ 14030784 (-) True LOC110532928
XM_036989203.1 mRNA upstream 31158 14154349 ~ 14191312 (-) True ndrg2
XM_036989208.1 mRNA upstream 90255 14213446 ~ 14223820 (-) False LOC110531544
XM_036989209.1 mRNA upstream 90255 14213446 ~ 14223820 (-) False LOC110531544
XM_036989207.1 mRNA upstream 90255 14213446 ~ 14223823 (-) False LOC110531544
XM_036989211.1 mRNA upstream 90255 14213446 ~ 14223827 (-) False LOC110531544
TU881137 other downstream 126703 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 414957 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 522197 13590253 ~ 13592088 (-) True G773163
TU880578 other downstream 1117875 12994269 ~ 12996410 (-) False G772877
TU882202 other upstream 126210 14249401 ~ 14254157 (-) True LOC118966145
TU882399 other upstream 600863 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 1114867 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 1229116 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1502011 15625202 ~ 15625920 (-) True G774954

Expression Profile