RNA id: TU882405



Basic Information


Item Value
RNA id TU882405
length 297
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G774432
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14742681 ~ 14742977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGATGCACTGGCTATTAGTGATGCACTGGCTATTAGTGATGCAATGGCCATTAGGGATGCACTGGCTATTAGTGATGCAATGGCCATTAGGGATGCACTGGCTATTAGTGATGCACTGGCTATTAGTGATGCAATGGCCATTAGGGATGCCACTGAACCAAGGTGGAGAAAACCTAACACTGCACCCGTGATGAAGGAGGCTCGCTGCTCATGTGCAACAAAGGTTTTCAGGAAGGGACCACTTAATTGCAGCAAAGTTGATGGACATCTCATTTTTCCCGACTTATGTACCTTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU882403 lncRNA downstream 7242 14730868 ~ 14735439 (-) True G774430
TU882400 lncRNA downstream 14980 14724931 ~ 14727701 (-) True G774428
TU882387 lncRNA downstream 24535 14716505 ~ 14718146 (-) True G774419
TU882393 lncRNA downstream 32451 14710024 ~ 14710230 (-) True G774424
TU882380 lncRNA downstream 42063 14700300 ~ 14700618 (-) True G774416
TU882476 lncRNA upstream 84192 14827169 ~ 14827561 (-) True G774485
TU882483 lncRNA upstream 91646 14834623 ~ 14834887 (-) True G774491
TU882507 lncRNA upstream 121377 14864354 ~ 14876876 (-) True G774513
TU882512 lncRNA upstream 131060 14874037 ~ 14880611 (-) True G774518
TU882576 lncRNA upstream 218313 14961290 ~ 15117567 (-) True G774565
XM_021614853.2 mRNA downstream 50314 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 95927 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 95949 14633925 ~ 14646732 (-) False LOC110531585
XM_036987390.1 mRNA downstream 115866 14531994 ~ 14626815 (-) False LOC110531563
XM_036987389.1 mRNA downstream 115867 14531994 ~ 14626814 (-) False LOC110531563
XM_021614849.2 mRNA upstream 49699 14792676 ~ 14803212 (-) True LOC110531581
LOC118966000 mRNA upstream 275054 15018031 ~ 15035380 (-) True LOC118966000
XM_021614813.2 mRNA upstream 521189 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 521190 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 521249 15264226 ~ 15268722 (-) True LOC110531572
TU882399 other downstream 18159 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 488524 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 755099 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1043353 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1150593 13590253 ~ 13592088 (-) True G773163
TU882572 other upstream 495081 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 609330 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 882225 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1039380 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 1119343 15862320 ~ 15863834 (-) True G775139

Expression Profile