RNA id: TU882507



Basic Information


Item Value
RNA id TU882507
length 648
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G774513
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14864354 ~ 14876876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTGAAGATGGATGGTCTTGGTTGGAATCTGTCCTCCTTTGTTTGATGCGGCAGAAACTAGAAATTCCCCTGAGTCTTGCAGTGACAGTTCTTGGATTGTTAAACGGAAGTTACTGTCGTTCATCTCTAGTCTCCCCTTAAACTGTGATCTTGGTAAGGAAATGTTCCCATCAAATTCTGCAATGACCATTTTTTTATACTTCCACTCCATTGACTTGATACCTTCCCTTTCTAAGCCTGAGGGCAGCTCCACTGAGTCCCCCACTGCTTTGTTGAACAGAGAAATACCCACACCATagtggaggatagagagtaggaGTATTCcctgtttggagaaggaggagaggggaccaCCAGACATCTCTGTTAGGAGTTGTATGTCTGTTTCCTCTGGCTGTAcgtcctccctatctctctgtgACTGACTGGTAGCTAGCTAGACTTGCGAAAacaaacagagaagagagagagagaataaagaagaGCGAGAAGAGATTTCCTTTGATGAGGGCTGCTGTTCTAGAATAGACTCGCTGTATGTTAGTTAAAAAGGAAGTCACACTGTATGGTGGTTCTCTGAAAACACCCCTCCATCAGCTTGAGAGTTAGACCATGAGGAGTGGGTGTGTTTGGGGTCTGTTACTATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU882483 lncRNA downstream 29467 14834623 ~ 14834887 (-) True G774491
TU882476 lncRNA downstream 36793 14827169 ~ 14827561 (-) True G774485
TU882405 lncRNA downstream 121377 14742681 ~ 14742977 (-) True G774432
TU882403 lncRNA downstream 128915 14730868 ~ 14735439 (-) True G774430
TU882400 lncRNA downstream 136653 14724931 ~ 14727701 (-) True G774428
TU882576 lncRNA upstream 84414 14961290 ~ 15117567 (-) True G774565
TU882583 lncRNA upstream 88115 14964991 ~ 14966005 (-) True G774568
TU882584 lncRNA upstream 89720 14966596 ~ 14970855 (-) True G774569
TU882586 lncRNA upstream 94757 14971633 ~ 15186606 (-) True G774570
TU882598 lncRNA upstream 115656 14992532 ~ 15142671 (-) True G774580
XM_021614849.2 mRNA downstream 61142 14792676 ~ 14803212 (-) True LOC110531581
XM_021614853.2 mRNA downstream 171987 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 217600 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 217622 14633925 ~ 14646732 (-) False LOC110531585
XM_036987390.1 mRNA downstream 237539 14531994 ~ 14626815 (-) False LOC110531563
LOC118966000 mRNA upstream 141155 15018031 ~ 15035380 (-) True LOC118966000
XM_021614813.2 mRNA upstream 387290 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 387291 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 387350 15264226 ~ 15268722 (-) True LOC110531572
XM_021614810.2 mRNA upstream 393314 15270190 ~ 15278916 (-) False LOC110531571
TU882399 other downstream 139832 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 610197 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 876772 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1165026 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1272266 13590253 ~ 13592088 (-) True G773163
TU882572 other upstream 361182 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 475431 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 748326 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 905481 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 985444 15862320 ~ 15863834 (-) True G775139

Expression Profile