RNA id: TU882641


Basic Information

Item Value
RNA id TU882641
length 557
lncRNA type intronic
GC content 0.46
exon number 2
gene id G774606
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15104033 ~ 15111297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctccttcttagctgaacattgtgtgacaaGGAACGGGACgacaagactcagagggatgacggacggcccaacagggccaatccaagaagactacacctcagcctgaaccaacccgaagacccgatcttctagaatcaacctactttctgttctgtatatgagacatgtgcaAACTGTTAGCGGGGcttcttttctgctggttccttaagaaccgaatgaaatgggcccgtatacgttgtaccagatatctttactcataattaaactgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882584 lncRNA downstream 133178 14966596 ~ 14970855 (-) True G774569
TU882583 lncRNA downstream 138028 14964991 ~ 14966005 (-) True G774568
TU882512 lncRNA downstream 223422 14874037 ~ 14880611 (-) True G774518
TU882507 lncRNA downstream 227157 14864354 ~ 14876876 (-) True G774513
TU882483 lncRNA downstream 269146 14834623 ~ 14834887 (-) True G774491
TU882660 lncRNA upstream 3929 15115226 ~ 15179341 (-) False G774617
TU882662 lncRNA upstream 3929 15115226 ~ 15181249 (-) True G774617
TU882665 lncRNA upstream 6370 15117667 ~ 15180992 (-) True G774618
TU882684 lncRNA upstream 43796 15155093 ~ 15217236 (-) True G774636
TU882689 lncRNA upstream 47824 15159121 ~ 15231035 (-) True G774641
LOC118966000 mRNA downstream 68653 15018031 ~ 15035380 (-) True LOC118966000
XM_021614849.2 mRNA downstream 300821 14792676 ~ 14803212 (-) True LOC110531581
XM_021614853.2 mRNA downstream 411666 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 457279 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 457301 14633925 ~ 14646732 (-) False LOC110531585
XM_021614813.2 mRNA upstream 152869 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 152870 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 152929 15264226 ~ 15268722 (-) True LOC110531572
XM_021614810.2 mRNA upstream 158893 15270190 ~ 15278916 (-) False LOC110531571
XM_021614809.2 mRNA upstream 158893 15270190 ~ 15281666 (-) False LOC110531571
TU882399 other downstream 379511 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 849876 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1116451 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1404705 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1511945 13590253 ~ 13592088 (-) True G773163
TU882572 other upstream 126761 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 241010 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 513905 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 671060 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 751023 15862320 ~ 15863834 (-) True G775139