RNA id: TU882662


Basic Information

Item Value
RNA id TU882662
length 1121
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G774617
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15115226 ~ 15181249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggagagagaacagaacaacacCATCAGACTCTgagTAACAGTGACATCATCACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCagtaactctactgatggttGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGTATGAAGATGTGGGTCTGGatcttctctctccctgataCCAGTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTggattttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGATGAAGATGTGGGTCTGgatcttctctctccctgacaccagTAGAGACCCTGGTCAGACTCAGTAACTCTACTGATGGTGGATCTGGTATTATGGTATTTATACTGGGACAAGCTAATCTCACTGTTGTCTTTGTACCATTTATAGCTCCAGTCACTGTAAGACCCAGCTGAACACGTCAGAGTGACTGTTTCTCCAGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882638 lncRNA downstream 3929 15104033 ~ 15111297 (-) False G774606
TU882640 lncRNA downstream 3929 15104033 ~ 15111297 (-) False G774606
TU882641 lncRNA downstream 3929 15104033 ~ 15111297 (-) False G774606
TU882643 lncRNA downstream 3929 15104033 ~ 15111297 (-) False G774606
TU882645 lncRNA downstream 3929 15104033 ~ 15111297 (-) False G774606
TU882724 lncRNA upstream 67980 15249229 ~ 15250300 (-) True G774673
TU882726 lncRNA upstream 87781 15269030 ~ 15269299 (-) True G774675
TU882735 lncRNA upstream 103070 15284319 ~ 15285918 (-) True G774681
TU882738 lncRNA upstream 125101 15306350 ~ 15307817 (-) True G774683
TU882789 lncRNA upstream 224253 15405502 ~ 15408709 (-) True G774728
LOC118966000 mRNA downstream 79846 15018031 ~ 15035380 (-) True LOC118966000
XM_021614849.2 mRNA downstream 312014 14792676 ~ 14803212 (-) True LOC110531581
XM_021614853.2 mRNA downstream 422859 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 468472 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 468494 14633925 ~ 14646732 (-) False LOC110531585
XM_021614813.2 mRNA upstream 82917 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 82918 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 82977 15264226 ~ 15268722 (-) True LOC110531572
XM_021614810.2 mRNA upstream 88941 15270190 ~ 15278916 (-) False LOC110531571
XM_021614809.2 mRNA upstream 88941 15270190 ~ 15281666 (-) False LOC110531571
TU882399 other downstream 390704 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 861069 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1127644 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1415898 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1523138 13590253 ~ 13592088 (-) True G773163
TU882572 other upstream 56809 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 171058 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 443953 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 601108 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 681071 15862320 ~ 15863834 (-) True G775139

Expression Profile