RNA id: TU882518


Basic Information

Item Value
RNA id TU882518
length 2911
lncRNA type read_through
GC content 0.42
exon number 4
gene id G774523
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15164072 ~ 15236469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAgtaaacattccataactgcaggtggcagtataTCACCAACCTTGATGTTTTACCACTTCAAACAACACACTAGGTGGCAGTGTGAACCCTTTCtgtttgtttaccaactcatagaaatAGTAGAAGAAGACAATTGACGATTTctaaatggagatggcctcaatgaaGCTGCCCATCTTCTCACAGATGCCATAATGCGACATACAGGTAGACAATAATGCAATGTCTATCTAAGTCCATGTGTTACCTATGGTTTGTAAACCAAGTTTTAGACCAGAACATTGGTCCCACTATCCAGAACCAGTGAATTGAGACCATAACAAGACAAAGACCAAATGTGTGTGTTCTTGAGTGGTCTCAAGACCAAGACCACTAGATCCTGAGTGGTCTCAAGACCAAGACCACTAGATCCTGAGTGGTCTCAAGACCAAGACCACTAGATCCTGAGTGGTCTCAAGACCAAGACCACTAGATCCTGTGTGGTCTCAAGACCAAGACCACTAGATCCTGTGTGGTCTCAAGGCCAAGACCACTAGATCCTGTGTGGTCTCAAGGCCAAGACCACTAGATCCTGAGCACATGGGCCCTTTCTGCAATTGTAAGAAGCTCAAGTAAAGTAAACttgagtacagtacattagaacacagtacagtacagtagagaacagttgaatacattcaagtagagtacagtagagcaggctacagttcagtagagcacagcacaacagagtagggtacagttcagaagagcacagtacaatagagtaggGTATAgttcagtagagcacagtagattaaggtacagtacagtagagcacagtacaatagagtagggtagagttcagtagagcacagtacaacaGAGTAGGGCAGAGTTCAGCAGAAAACAGTACAACagagtagtgtacagttcagcaGAAAATAGTACAATACGGTCAactagagtacaatagagtagggtacagttcaGCAGAaaacagttcagtagagtacagtacagtaaagcagggtacagttcagtagagtacagtacaatagagtagggtacagttcagtagagcacagtacaatagagtagggtacagttcagtagagcacagtacaatagagtagggtacagttcaGTAGAGCACAGTGCAATAGAGTAGGGTATAGTTCAGTAGAGCACAGTGCAACATAGTAGGgtatacagtagagcacagtgcaATAGAGTAGGGTACACTTCAGAAGAGTACAATGCAACAAAGTAGTGTACAgatcagtagagcacagtaccatagagtagggtacagtagagtacagtatagtagggtACAGatcagtagattacagtagaataGGGTACAGTACGGGAGAGCACAGTACAAAAGagtattgtacagtacagtagagtacagtagagtagggtacagtacagtatagtacattatagtagggtacagtacagtagagtagggtacagtacagttgagtacaatagagtagggtacagtacagtagagtacagtagagtagggtacagtacagtagagtacagtatagtagggtacagtacagcagagtacagtagagtagggtacagtagattagaggacagtagagtagggtacagtacagtagagtacagtacagtacagtagagtagggtacagtacagtatagtagggtacagtacagtacagtacagtagggtacagtacagtagagtacagtagagtagggtacattacattagaggacagtagagtagggtacagtacagtagagtagggtacattacattagagtacaatagagtagggtacattacattagaggacagtagagtagggtacagtagattagaggacagtagagtagggtacagtacagtagagtagagtagagtagggtacagtacagtacagtacagtagagtagggtacagtacagtagagtagggtacagtacattagaggacagtagagtagggtacagtacagtacagtacagtagagtagggtacagtacagtagagtagggtacattacattagaggacagtagagtagggtacagtacagtagagtagggtacagtacagtagagtagggtagggtacagtagagtagagtacagtagagtattgtacagtacagtagattactTTAGAGcagggtacagtagagtacagtacagtagagtattgtacagtacagtagtatatagtagtagtgtTTTGGTCAAATGTTTGTCAATGTTTGGCGTCTTGGAGGGTTGGAACCCCCCTGTTCGCTATACATCTCAATACTCTACACTTTTTCCTGAATTGTGCACTTGTCCACTACCCACATGGTGGTGCTCTGGgacagttcagtagagtacagtacaatatagtagggtacagtacagtagagtacagtcgagtacagtagagcaggggATAGGgaagtagagtacagcagagtagggTACAGTCCGGGAGagcacagtacaatagagtagggtacagtacagtaaggtacagtacagtagagtacagtagagtagggtacagtacagtagagtacattagagtagggtacagtacagtagagtacaatagagtagggtatagtacagtagagtagggtacagtacagtagagtagggtacagtacagtagagtacagtagagtagggtacagtacagtagagtacattagagtagggtacagtacagtagattagggtacagtacagtagagtagggtacattacattagaggacagtagagtagggtacagtacagtagagtagggtacagtacagtagagtagggtacagtagagtattgtacagtacagtagattacagtagagtaaggtacagtagagtacagtacagtagagtattgtacagtacagtagagtacagtagagtaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882598 lncRNA downstream 21401 14992532 ~ 15142671 (-) True G774580
TU882576 lncRNA downstream 46505 14961290 ~ 15117567 (-) True G774565
TU882638 lncRNA downstream 52775 15104033 ~ 15111297 (-) False G774606
TU882640 lncRNA downstream 52775 15104033 ~ 15111297 (-) False G774606
TU882641 lncRNA downstream 52775 15104033 ~ 15111297 (-) False G774606
TU882724 lncRNA upstream 12760 15249229 ~ 15250300 (-) True G774673
TU882726 lncRNA upstream 32561 15269030 ~ 15269299 (-) True G774675
TU882735 lncRNA upstream 47850 15284319 ~ 15285918 (-) True G774681
TU882738 lncRNA upstream 69881 15306350 ~ 15307817 (-) True G774683
TU882789 lncRNA upstream 169033 15405502 ~ 15408709 (-) True G774728
LOC118966000 mRNA downstream 128692 15018031 ~ 15035380 (-) True LOC118966000
XM_021614849.2 mRNA downstream 360860 14792676 ~ 14803212 (-) True LOC110531581
XM_021614853.2 mRNA downstream 471705 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 517318 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 517340 14633925 ~ 14646732 (-) False LOC110531585
XM_021614813.2 mRNA upstream 27697 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 27698 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 27757 15264226 ~ 15268722 (-) True LOC110531572
XM_021614810.2 mRNA upstream 33721 15270190 ~ 15278916 (-) False LOC110531571
XM_021614809.2 mRNA upstream 33721 15270190 ~ 15281666 (-) False LOC110531571
TU882399 other downstream 439550 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 909915 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1176490 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1464744 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1571984 13590253 ~ 13592088 (-) True G773163
TU882572 other upstream 1589 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 115838 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 388733 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 545888 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 625851 15862320 ~ 15863834 (-) True G775139

Expression Profile