RNA id: TU882572


Basic Information

Item Value
RNA id TU882572
length 2706
RNA type TUCP
GC content 0.44
exon number 2
gene id G774562
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15238058 ~ 15253973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccagaaggacaaccatctccacagaggaactctggagctctgtcagaatgaccatgtggttctttgtcacctccatgaccaaggccagctctaggaagagttttggtggttccaatttcctccatttaagaatgatcgaggccactgtgttcttggcgaccttcaatgctgcagacttttggtacccttccccagatctgtgcctcgacacaatcctgtcttggagctctacggacaattccttcgacctcatggtttggtttttgctctaacaactgtgggaccttatgtagacaggtttgtgcctttccaaattatgtccaatcaatttaatttaccacaggtggactccaatcaagttgtaaaaacatctcaaggatgatcaatggaaacaggatgcacccgagctcaatttcgaatctgatgCAGGACCAGGAGAATGACCAGTAGGACACCAGCAACAAGCAGACCCACAACCACTCCTACTAGGACTGATGTAGAGGAAGCAGGAGCTACGACCGGAGAGAGAACAGTACAACACCATCAGACTCTGAGGTGGAAAATAAATAGTATTTCAATTCCTGTATGTATTTGAGTCtggagagagaacaggacagacagagagggtataTGGGTTTACAGTATAGAGCATGAAAAGAAAGCAGGCTGGCCCGTCTTTTGACAATTTAGTTGAGTCATCATATTTTCTAGAGGAATGGAAATCACAAACTATATTAACATCAACACTTAAATCACGTTTTTAACACAGATAATTGAAAGGTAACTTAGTTGTGATCATACACATTTTCTcacctctcactgtcacccagcTCTCTGGTGATTCTCCTTCATCAGATTTACACTTATAGAATCCTTCATCTGACTTGGATACTGCAGGGATGGTCATCTCTCCTGTGGTCTCATTCTTGATGAGTGTTCCATCTTTGTAGAAATCAGTCTTGGGTTTAGAATTTGTTCCCTGATGTCTAAATGTACAGGTCAGAGTCACAGAGTCTCCTTCAGTCACAGGATGGACAGGGCTCTCCAGGATCACAACACCACCTGTGTAACATAATATATCAACAATACTGTAAATCTGGAGTCATCACTCACAATACATCAACATCTTATGAGCTTGTATGATATGAGACACGATGATTCAGTTACAGAATGAAACAAAACATGCATTGAAATGTAAAAACGCTAGTGAATGTTGTACAATAGACGTACCATTTACTGTGATGTTGACAGCATTACTGTACTCTCCTGATCCAGACTCACACCAGAACACTCCACTGTACCATGTGTCCAATGATGTGATGGTGCAGGTGGATTCTGTTATTGATCTCCAGGTAGATGGACACTCTGACGGCcatgctgtctctgtgtgtctcttcagTCTCCATCCAGTAGAGTTCCCCTTCAGCTCACAGATCAGTGAGAGAGACTTTGATGTAAAGTGTTGAGTTGTGTTGGGATTTACTGTAAGAGACACCGAAGGCTGCAGATCtgaaacaaagagagacagagacaaacctATAGTTATATAGACACATAAGAGTGACTTAAATATGATTCAATACAGTTTCAATGCAGTTGGTTACCTCCTGACCAGAGAAACTGAGGTTCACTGTAGAGTGTGTCATAGACTGGGTCTCCTCTCCCAGCTCTACACACATATCCTCCTGTGGGAGTAGGACCAGCAGGGATCAGAGTGTAGGAGTCTTCAGTAGTCACATTGCCAGATAGGGGCTGTAGAGAGTAAGACTCGTGTAATAGGGAGGGTAACCCAGCTCTGTAGGGAACAGTCCTGTACCAGGAGAAGCTCCAGTCTGTAGACGTCTTGTCAACCTCACAGCTCAGAGTCACTGAGTCTCCAGGGTTCAGCCACTGAGGAGAGATTCTCAGGACAGGTTGAGGTTGATCTGTGATTTGATAGAGGACAGGTTTCAACCTTTCAGTCTTAGAAAGTATTCTAGTGAATTTATTTTATACATGATTAGATAGACTTACCAGACACGGTCAGTTTTACAGCCTCACTGGTCTTGGAGAACTTGTTTCCCTTTACACCCTCACAGGTATATGATCCACTGTTAGACATGTAGACAGGACTGATTCTGTACTCAGGCTTTATGTTAAAGGGGATCACTACCGGACTATTCTTATACCATCTGTAGTTCCAGTCagagtctcctcctccctgtatgtcACATCTCATAGTGACAGTCTCTCCAATGAATATCTGGGTCCAGTTGGGTTGGAGGGTCAGAACAGCAACAGgcctctctgcacacacacaacacagacaacTAACTGAATAAACTGTTGCACTATAGCTTCAAGTTAGCTGTCGTTGTTGTGATACAGTAAACAGACACAATATTATACCCTAGATGACTTTCTATCCATATAAAATACCATCCATTTATCATAAAACTGTTTTAGACTCACCAGTAATGTTTATCTGGACTGGGTCACTGTACAGGGTGTAGTAGACTGGGTCTCCTCTCCCAGCTCTGCACCAGTACTGTCCTCCATCAGAGACACTGACCCTGCTGAGTGTGTAGGAGTATCCAGAGGTTGTGGTTACTGGTGTAGAGTCTGGTCTGTGTCTGTACCAGTAAAATTTCCATCCAGGAGACTCAACAGTACAGTTCAGTGTCACTCTGTCTCCTGTGAATACGTCTTCTTTGTCTGAAGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882518 lncRNA downstream 1589 15164072 ~ 15236469 (-) True G774523
TU882689 lncRNA downstream 7023 15159121 ~ 15231035 (-) True G774641
TU882684 lncRNA downstream 20822 15155093 ~ 15217236 (-) True G774636
TU882586 lncRNA downstream 51452 14971633 ~ 15186606 (-) True G774570
TU882662 lncRNA downstream 56809 15115226 ~ 15181249 (-) True G774617
TU882726 lncRNA upstream 15057 15269030 ~ 15269299 (-) True G774675
TU882735 lncRNA upstream 30346 15284319 ~ 15285918 (-) True G774681
TU882738 lncRNA upstream 52377 15306350 ~ 15307817 (-) True G774683
TU882789 lncRNA upstream 151529 15405502 ~ 15408709 (-) True G774728
TU882833 lncRNA upstream 253359 15507332 ~ 15507668 (-) True G774767
LOC118966000 mRNA downstream 202678 15018031 ~ 15035380 (-) True LOC118966000
XM_021614849.2 mRNA downstream 434846 14792676 ~ 14803212 (-) True LOC110531581
XM_021614853.2 mRNA downstream 545691 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 591304 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 591326 14633925 ~ 14646732 (-) False LOC110531585
XM_021614813.2 mRNA upstream 10193 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 10194 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 10253 15264226 ~ 15268722 (-) True LOC110531572
XM_021614810.2 mRNA upstream 16217 15270190 ~ 15278916 (-) False LOC110531571
XM_021614809.2 mRNA upstream 16217 15270190 ~ 15281666 (-) False LOC110531571
TU882399 other downstream 513536 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 983901 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1250476 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1538730 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1645970 13590253 ~ 13592088 (-) True G773163
TU882761 other upstream 98334 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 371229 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 528384 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 608347 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 658863 15912836 ~ 15913294 (-) True G775532

Expression Profile