RNA id: TU882735


Basic Information

Item Value
RNA id TU882735
length 1457
lncRNA type read_through
GC content 0.44
exon number 2
gene id G774681
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15284319 ~ 15285918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGCGTATGATATGTCTGTgacactacagtgtgtgtgtgtggtcagcgtACGATATATCTGTGTGAcacgacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtcagcgTACGATATGTCTGTGTgacactacagtgtgtgtgtgtggtcagcgtACGATATGTCTGTgacactacagtgtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtgaagggatgTTCCTTCATACAGAGTGGCATAGGTCTGAACTGAAAGACACCTTTTGCACAGACGACTTGTATTCATTGGGAGAGGAAGTCTGTTAACCCTCTAAGTGTGTGGTCAGCGTACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTGACACTACAGTGTGTGTGGGGTCAGCGTACGATATGTCTGTGTGACACTACAttgtgtgtgtggtcagtgtACGATATGTCTGTGTGACACTACAGTGTGTGTTGTCAGCGTATGATATGTCTGTGACACTACAGTGTGTGGTCAGCGTACGATATGTCTGTgacactacagtgtgtgtgtgtggtcagcgtACGATATATCTGTGTGAcacgacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTGACActacagtgcgtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtgtgtgtggtcagcgtACGATATGTCTGTGTGACACTACAGTGTGTGTTGGGGCTCCAGAGGGGATTTTTCGTTTACCTTGGCATAGTGGACGATTCCAGACTCTTACTTTCATTCTGTCTCTTAGCTCGACATTCGTTTACCCACTCTTTTGAGTAGGTTATTTTTCTTCTGGTCTTTTGTCTGTGTTTTTCCTACATTTCTGTCTAGAGTTCTCTAACCATCTCTCTCACATAGAGGTTAGAACTGATGGTTCCTCCCTTTGTCAAACCGCTGCACAACAAACTAGGGCATGCATACACATGTCTTTAATGATCATTTTCTCTTTTAATCTTGTTCACTTATGTAATATAGAAATCACAATCTTGTATTTTTCCTGGAAAGCCTTTGTCCTTTCTTTTGATTTTATGTTTGTAGATACGACGACGACAAAAAGTGTACATTATTTTCTCTCACATTTGAATAAATGGTGAGGTTGTTAGCTGCGAAGAAGGAAAATTAAGTCTTGTTGCAGGTTCATGTGTATTGTGACATTAAAAAGAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882726 lncRNA downstream 15020 15269030 ~ 15269299 (-) True G774675
TU882724 lncRNA downstream 34019 15249229 ~ 15250300 (-) True G774673
TU882518 lncRNA downstream 47850 15164072 ~ 15236469 (-) True G774523
TU882689 lncRNA downstream 53284 15159121 ~ 15231035 (-) True G774641
TU882684 lncRNA downstream 67083 15155093 ~ 15217236 (-) True G774636
TU882738 lncRNA upstream 20432 15306350 ~ 15307817 (-) True G774683
TU882789 lncRNA upstream 119584 15405502 ~ 15408709 (-) True G774728
TU882833 lncRNA upstream 221414 15507332 ~ 15507668 (-) True G774767
TU882781 lncRNA upstream 273539 15559457 ~ 15561311 (-) True G774720
TU882877 lncRNA upstream 297095 15583013 ~ 15583220 (-) True G774807
XM_036987407.1 mRNA downstream 2448 15270190 ~ 15281871 (-) True LOC110531571
XM_021614809.2 mRNA downstream 2653 15270190 ~ 15281666 (-) False LOC110531571
XM_021614810.2 mRNA downstream 5403 15270190 ~ 15278916 (-) False LOC110531571
XM_021614813.2 mRNA downstream 15597 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA downstream 15597 15264167 ~ 15268722 (-) False LOC110531572
trnaa-ugc-30 mRNA upstream 11263 15297181 ~ 15297253 (-) True trnaa-ugc-30
XM_036987416.1 mRNA upstream 93411 15379329 ~ 15436702 (-) True LOC110531568
XM_021614858.2 mRNA upstream 152588 15438506 ~ 15454318 (-) False rbm14b
XM_021614860.2 mRNA upstream 152588 15438506 ~ 15454318 (-) False rbm14b
XM_021614859.2 mRNA upstream 152589 15438507 ~ 15454316 (-) False rbm14b
TU882572 other downstream 30346 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 559797 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1030162 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1296737 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1584991 13697179 ~ 13699328 (-) True G773168
TU882761 other upstream 66389 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 339284 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 496439 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 576402 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 626918 15912836 ~ 15913294 (-) True G775532

Expression Profile