RNA id: TU881866



Basic Information


Item Value
RNA id TU881866
length 630
RNA type TUCP
GC content 0.54
exon number 2
gene id G773983
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15291949 ~ 15299214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCTCAACCCCGTCAGGAGCATGTGGATCCTACAGTGTGTTCCgaaacagtgtctgtgtgtgagtttgtgcgaCGTGTGTGGTTTCAGATATGTGTGTATGAgcaagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtctcacCGTGCTGAGCTACTGGTGGCTGAGGAGGAGGCGCTGTGGTGTAGGGGTCTCAGGCCCggcccctctatctcctccccaCAGTCCTCCATGTCCACGTCGCTACGGGAACGAGGGACTGTCTCCACTCCTGAAGCCCCGCCCCGCCGACGCCCCTCCCCCTGCGCCTTCAGAGACTCACTACGAGCCAGACGCACCGACACCATAGGGctgagaaagagacaGCTGCTGGAGGACAGTCTCTGGAGGTCTCCCTCGTCCCCCTCCTCCCCGGGGATCTCTGGGTGGTTCTCAAACTGCTGGATGATGTTCCTCACACTGCCAGGACGCACTGAGAGGAGacgagacaggacacacacacacacagaacatcaaATCAATctaatgtattttataaagcccatTTTAGAAATCAGCAGTTGTTACAGTGTGCTTTactgatacccagcctaaaaccccaaagtgAAAGCAATAACAGTACATCAAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU881867 lncRNA upstream 4228 15293046 ~ 15294230 (+) True G773984
TU881862 lncRNA upstream 15282 15282922 ~ 15283176 (+) True G773980
TU881855 lncRNA upstream 16823 15280419 ~ 15281635 (+) False G773974
TU881854 lncRNA upstream 16823 15280944 ~ 15281635 (+) True G773974
TU881861 lncRNA upstream 18198 15279980 ~ 15280260 (+) True G773979
TU881872 lncRNA downstream 1348 15300562 ~ 15301176 (+) True G773989
TU881873 lncRNA downstream 2566 15301780 ~ 15303123 (+) True G773990
TU881874 lncRNA downstream 4545 15303759 ~ 15304244 (+) True G773991
TU881875 lncRNA downstream 5953 15305167 ~ 15305383 (+) True G773992
TU881877 lncRNA downstream 8785 15307999 ~ 15308928 (+) False G773994
XM_021614816.2 mRNA upstream 35815 15252465 ~ 15262643 (+) False LOC110531573
XM_021614817.2 mRNA upstream 35816 15257204 ~ 15262642 (+) True LOC110531573
XM_021614815.2 mRNA upstream 35817 15252478 ~ 15262641 (+) False LOC110531573
XM_036987397.1 mRNA upstream 50353 15217597 ~ 15248105 (+) False LOC118965999
XM_036987398.1 mRNA upstream 112512 15085681 ~ 15185946 (+) False LOC118936439
XM_036987415.1 mRNA downstream 43710 15342924 ~ 15348526 (+) True LOC118966002
XM_021617138.2 mRNA downstream 53068 15352282 ~ 15362094 (+) True LOC110533001
XM_021614865.2 mRNA downstream 172001 15471215 ~ 15505643 (+) False LOC110531590
XM_036987417.1 mRNA downstream 224342 15523556 ~ 15561336 (+) False si:ch211-168d1.3
XM_036987418.1 mRNA downstream 229816 15529030 ~ 15561336 (+) True si:ch211-168d1.3
TU881409 other upstream 914292 14382670 ~ 14384166 (+) True G773601
TU881408 other upstream 914367 14382670 ~ 14384091 (+) False G773601
TU881387 other upstream 972625 14306630 ~ 14325833 (+) False G773583
TU881365 other upstream 983208 14311468 ~ 14315250 (+) True G773562
TU881333 other upstream 1081606 14213449 ~ 14216852 (+) False G773535
TU881923 other downstream 76010 15375224 ~ 15377188 (+) True G774021
TU881976 other downstream 166146 15465360 ~ 15465624 (+) True G774065
TU881932 other downstream 172293 15471507 ~ 15501076 (+) False LOC110531590
TU883269 other downstream 566875 15866089 ~ 15866708 (+) True G775142
TU883454 other downstream 887062 16186276 ~ 16187450 (+) True G775306

Expression Profile