RNA id: TU881923


Basic Information

Item Value
RNA id TU881923
length 1941
RNA type TUCP
GC content 0.40
exon number 2
gene id G774021
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15375224 ~ 15377188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGAGATTAACACATATTTATTCTGCTACAAATGAGAAGTGTACAGGAGGCGTCTCACCATAGAGATACTCTATAGAGAATCTAGGAAGATCCATTTAGTTAACAAAGTGGGACATTTTCTCTGAACTTAAACTTTAGATACAATGtaacagaaagacagagaagtTGCTTAGAGAGCTCCTAAATTCCTTCACACTTTTGGATCAAACCAATAATCACGTTTACTCATACAGAAAAACACTTGTCGACAAGCATGGAGAGTGTCTTCTTATTCATTGCTTGTAGTTCTGTTAGCAATTGTGTCATGTAGATTAGTTGATTTATATAGTTAATCAACTTTTTACCACACATttcattaaaggggcaatcaagTTAATACATCCAAAGTTATTACATCCATTGTTTGAATTTCGTATTaattatatgtacccattgattcttgaagtacacagaccccttgactttttctacattttgttacgttacagcctttttttaaatgtattaaatatttgtttttcctcatcaatctatacacaataccccataatgaaaagcgaaaacagttttttagaaatgtttgcaaatgtatacctGAGCATCTTTTAAATAtttctacaactggattggagtccacctgtggtcaattcaattgactggacatgatttggaaaggcacacacctgtctatataaggtcccacagttgacagtgcatggttGAGCAAAAAAcaatccatgaggtcgaaggaattgtccgtagagctccgagacaggattgtgtcaaggcacagatatggggaagggtaccaaaacatttctgcagcattgaaggtccccaaaaacacagcgGCCTTCATCATTttttaatggaagaagtttggaagcaccaagactcttcctagatctggtcgtccggccaaactgagcgattgggggagaagggccttggtcagggaaagatgaacggagcaaattacagagatatccttgatgaaagcctgctccagagtgctcaggacctcagactggggcgaaggtacaCCTTGCAAAAGGACAACagcccgaagcacacagccaagacaacgcaggaatggcttctggacaagtctctgaatgtccttgagtttcccagccagagcccggacttgaacccgatctggagagatctgaaaatagctgtgcagcgacgctccccattcaacctgacagaacttgagaggctctgcagagaagaatgggagaaactccccaaacacaggtgtgccaattgtttttgcaacaaggcactaaagtaatactgcaaagaaaACGTGCCAAAGCAATTCTCTTTTATCCTGAataaaaagtgttatgtttggggcaaatccatgtccatattttcaagcatagtgttaGCTGCATTATgttgtgggtatgcttgtaatcattcaggactgggaagtttttcaggataaaaataaacagagtagagctaagcacaggcaagaaagaggaaaacctggttctgtctgctttccaacagacactgggagacaaattcacctttcagcaggacaataacctaaaacatgttgccaaatatataatataagcaactggagttgcttaccaagatgacattgaatgtttccgagtggcctagttacagttttgacttaaatcaacttcataatctatggcaagacttaataATGGCTGtctatcaatgatcaacaaccaacttgacagagcttgaaaaatgtaaaaataataataatgcaaaaAGGCAGctgaaagaatcacagctgtaatcactcttagagacttaccctgaaagaatcacagctgtaatcacttttagagacttaccctgaaagaatcacagctgtaatcactcttagagacttaccctgaaagaatcacagctgtaatcactcttagagacttaccctgaaagaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU881882 lncRNA upstream 60760 15313841 ~ 15314464 (+) False G773997
TU881883 lncRNA upstream 60760 15313957 ~ 15314464 (+) False G773997
TU881884 lncRNA upstream 60760 15314057 ~ 15314464 (+) True G773997
TU881886 lncRNA upstream 62742 15312233 ~ 15312482 (+) True G773998
TU881880 lncRNA upstream 65072 15309695 ~ 15310152 (+) True G773995
TU881914 lncRNA downstream 2162 15379350 ~ 15381388 (+) True G774016
TU881926 lncRNA downstream 61339 15438527 ~ 15444331 (+) True G774024
TU881975 lncRNA downstream 81103 15458291 ~ 15458506 (+) True G774064
TU881980 lncRNA downstream 92207 15469395 ~ 15469681 (+) True G774069
TU881982 lncRNA downstream 93778 15470966 ~ 15471165 (+) True G774071
XM_021617138.2 mRNA upstream 13130 15352282 ~ 15362094 (+) True LOC110533001
XM_036987415.1 mRNA upstream 26698 15342924 ~ 15348526 (+) True LOC118966002
XM_021614816.2 mRNA upstream 112581 15252465 ~ 15262643 (+) False LOC110531573
XM_021614817.2 mRNA upstream 112582 15257204 ~ 15262642 (+) True LOC110531573
XM_021614815.2 mRNA upstream 112583 15252478 ~ 15262641 (+) False LOC110531573
XM_021614865.2 mRNA downstream 94027 15471215 ~ 15505643 (+) False LOC110531590
XM_036987417.1 mRNA downstream 146368 15523556 ~ 15561336 (+) False si:ch211-168d1.3
XM_036987418.1 mRNA downstream 151842 15529030 ~ 15561336 (+) True si:ch211-168d1.3
trnas-gcu-6 mRNA downstream 227130 15604318 ~ 15604399 (+) True trnas-gcu-6
XM_021614880.2 mRNA downstream 231242 15608430 ~ 15611523 (+) True nit1
TU881866 other upstream 76010 15298458 ~ 15299214 (+) True G773983
TU881409 other upstream 991058 14382670 ~ 14384166 (+) True G773601
TU881408 other upstream 991133 14382670 ~ 14384091 (+) False G773601
TU881387 other upstream 1049391 14306630 ~ 14325833 (+) False G773583
TU881365 other upstream 1059974 14311468 ~ 14315250 (+) True G773562
TU881976 other downstream 88172 15465360 ~ 15465624 (+) True G774065
TU881932 other downstream 94319 15471507 ~ 15501076 (+) False LOC110531590
TU883269 other downstream 488901 15866089 ~ 15866708 (+) True G775142
TU883454 other downstream 809088 16186276 ~ 16187450 (+) True G775306
TU883480 other downstream 860186 16237374 ~ 16239534 (+) False LOC110532936

Expression Profile