RNA id: TU882789


Basic Information

Item Value
RNA id TU882789
length 453
lncRNA type intronic
GC content 0.45
exon number 2
gene id G774728
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15405502 ~ 15408709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacatgtgggacaggacagtacattactatagaacaggtgggacaggacagcacattactatagaacatgtgggacaggacagcacattataatagaacatgtgggacagggcaGCACagtactatagaacaggtgggacaggacagcacattactatagaacaggtgggacaggacagcacattactatagaacaggtgggacaggacagcacattactatagaacaggcgggacaggacagcacagtactatagaacatgtgggataggacagcacattactatagaacatgtgggacaggacagcacattactatagaataTGTGGGATAGGACAGCACATTataatagaacaggtgggacaggacagcacattactatagaacaggtgggataggacagcacattactatagaacatgtgggacaggacaggacaggacagtactacag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882738 lncRNA downstream 97685 15306350 ~ 15307817 (-) True G774683
TU882735 lncRNA downstream 119584 15284319 ~ 15285918 (-) True G774681
TU882726 lncRNA downstream 136203 15269030 ~ 15269299 (-) True G774675
TU882724 lncRNA downstream 155202 15249229 ~ 15250300 (-) True G774673
TU882518 lncRNA downstream 169033 15164072 ~ 15236469 (-) True G774523
TU882833 lncRNA upstream 98623 15507332 ~ 15507668 (-) True G774767
TU882781 lncRNA upstream 150748 15559457 ~ 15561311 (-) True G774720
TU882877 lncRNA upstream 174304 15583013 ~ 15583220 (-) True G774807
TU882885 lncRNA upstream 183952 15592661 ~ 15592872 (-) True G774815
TU882888 lncRNA upstream 192157 15600866 ~ 15601141 (-) True G774818
XM_036987411.1 mRNA downstream 84472 15285883 ~ 15321030 (-) True LOC110531570
XM_036987408.1 mRNA downstream 91007 15285883 ~ 15314495 (-) False LOC110531570
XM_036987409.1 mRNA downstream 91007 15285883 ~ 15314495 (-) False LOC110531570
XM_036987412.1 mRNA downstream 91007 15285883 ~ 15314495 (-) False LOC110531570
XM_036987413.1 mRNA downstream 91007 15285883 ~ 15314495 (-) False LOC110531570
XM_021614858.2 mRNA upstream 29797 15438506 ~ 15454318 (-) False rbm14b
XM_021614860.2 mRNA upstream 29797 15438506 ~ 15454318 (-) False rbm14b
XM_021614859.2 mRNA upstream 29798 15438507 ~ 15454316 (-) False rbm14b
XM_021614856.2 mRNA upstream 29798 15438507 ~ 15454318 (-) False rbm14b
XM_021614857.2 mRNA upstream 29798 15438507 ~ 15454319 (-) True rbm14b
TU882761 other downstream 44183 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 151529 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 680980 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1151345 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1417920 13980328 ~ 13987582 (-) True LOC110531538
TU883038 other upstream 216493 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 373648 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 453611 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 504127 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1418344 16827053 ~ 16828523 (-) False LOC110531626

Expression Profile