RNA id: TU883036



Basic Information


Item Value
RNA id TU883036
length 224
lncRNA type intronic
GC content 0.43
exon number 1
gene id G774952
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15622075 ~ 15622298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTCTACCTTTGACCTGTGTAACTGCCAGTATGAAATGTCTGCCAGTGTTGAATGTTATGGTTAAAGTTAGACTCCAGAGTCAAGGGATCACTGATAATGTATCTGTGACACTATGTGATTCTGTAGCAGCTGATGTTGTGACATCCTACAAGCCTCtcggctggtgtttacagaacattagGTGCGTTGTGATTAAGAAGAAGGGTATTCTCAGAGAAGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU883034 lncRNA downstream 1260 15620442 ~ 15620815 (-) True G774950
TU883031 lncRNA downstream 4181 15617050 ~ 15617894 (-) True G774947
TU882869 lncRNA downstream 18102 15603448 ~ 15603973 (-) True G774799
TU882890 lncRNA downstream 19878 15601958 ~ 15602197 (-) True G774820
TU882888 lncRNA downstream 20934 15600866 ~ 15601141 (-) True G774818
TU883041 lncRNA upstream 6745 15629043 ~ 15633427 (-) True G774957
TU883045 lncRNA upstream 7805 15630103 ~ 15631781 (-) False G774959
TU883044 lncRNA upstream 8397 15630695 ~ 15631781 (-) False G774959
TU883046 lncRNA upstream 8882 15631180 ~ 15631781 (-) True G774959
TU883047 lncRNA upstream 12138 15634436 ~ 15635222 (-) True G774960
XM_021614882.2 mRNA downstream 13422 15605805 ~ 15608653 (-) True LOC110531598
XM_021614881.2 mRNA downstream 13687 15605030 ~ 15608388 (-) False LOC110531598
XM_036987420.1 mRNA downstream 22124 15595134 ~ 15599951 (-) True b4gat1
XM_021614868.2 mRNA downstream 43361 15569635 ~ 15578714 (-) False LOC110531593
XM_021614883.2 mRNA upstream 44192 15666490 ~ 15678852 (-) True mfap3l
XM_036989260.1 mRNA upstream 62341 15684639 ~ 15688747 (-) True LOC118966163
XM_021614885.2 mRNA upstream 75524 15697822 ~ 15739778 (-) False intu
XM_021614884.2 mRNA upstream 75524 15697822 ~ 15739780 (-) False intu
XM_021614887.2 mRNA upstream 75524 15697822 ~ 15740853 (-) False intu
TU882761 other downstream 260756 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 368102 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 897553 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1367918 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1634493 13980328 ~ 13987582 (-) True LOC110531538
TU883038 other upstream 2904 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 160059 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 240022 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 290538 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1204755 16827053 ~ 16828523 (-) False LOC110531626

Expression Profile