RNA id: TU883008


Basic Information

Item Value
RNA id TU883008
length 3059
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G774924
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15658774 ~ 15661855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGTTTAATCTTAACATATAGTTAAAATGTACAATCAATGTAATCATACATACAATTCTGCCTAATGACCAACTAAACAACTACCATaaaaggaaaaacatttattcGTATGAAGACAACCACAGTGCTAGAAGATGACCACCACAGGGGACGATGCGCTCTTCATCAACCGACAGCAGGTCGTATCCATTAGGGCAAGCAACGGAAAACGTTTGGCAATGGAAAATGGGTCCAGCTAGTCCCCCTCTGTCTGTTTTATTCTTTCGTTTGgtccctaatgaatatgacctagGACAGTCACTGCAATACTAAGGAACTAGAGTGAAAATCATTGGCAGCGGTAGTCATCACCTGCCCTTCCCCCTTtagaatgtgtcccaaatggcgccctctTCCCTATGAAGtgtacttcttttgaccagagtcctctgggccctggtcaaaagtagtgcactatatagggaaaagggtggcaTTATTGACACAACCCTTATCCTTCACTCAGCAGGTAAGGTGCTACTCTATGCATCGTGTCATGGAAACGAAGTAAGAGAGAAAGGGGACTCCTTTGGCTGGTGCACACATTGAGGTCACTGCTTCCTGTGTGGTGGGCCACACATTAAAGGGTGAAGCAGACATAAGATCCTATTTACAGTTTTTCATGAGTCTAGGTTTACACGTGGCTGGTTCAAAATGATTGCCTTTGGTGTGCTGTACGTTTCAACAACTCAAATATACACGTTTATTTTAAAGTTTAAAGGAGTTGGTGGCACAACTCGTGTTGTACCTTCAATTCATGCTTTTTAGAATTACATATGGTTCTGTCCCAAACgacgccctattccctatacactgagggtacaaaacattaaaCACCTCTTTCCATGATCTACAAtgaccaggtgaaagttatgatcccttattgatgacaCCTGttaaatcagtatagatgaaggggaggcgatggcttaaaaatccttcttcaaccttTGAGACATTCATTAtttatgccattcagagggtgaatggtcaaGATAAAAACTTTTACATGCCTTTTGAATGGcagatggtagtaggtgccaggcgcagcgGTTtgagtttcccgtgtgtatcaaggatggtccaccacccaaaggacatcaagccaATTTGACAActgaagtattggagtcaacatgggccagcatccctgtggaacactttcaacaacttgtagagtccacgccctgaccaattgaggctgttctgagggcaaaagggagagcaactcaatattaagatgttcctaatgtgttgtacacAGTCTataactttagaccagagccctatgggccatgTTCAagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatataggaaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtaagagtagtgctctatatagggaatagggtgccatttgtgacgccACCATGGAATGCTGGAAGTCGATTTAAAATGGTTTATATTGGTTAAAAGTGGCATGCAAAGAAAAGTATGTTGAATTGTTCTTGTTGACGACTGGGCAGAGGAGCCTTGAAAGATACATTTCTCACACCATGAAACAGCTTAATTAAGCAAAGTAAAATCTTCAAGACACGGTTACTGTGCAGTATTACCATCGACATCATCATTTATGTTGTTCACTTGGAAAGAAAAAAGTGCAGTTCTCCAGTCTTGACTTTGTCTCGTTACTTGACTGCAGATATCAATACTAAACGTAATAgcaatagtaaaaaaaaaaaacttctccAGTTAGAGTAACTCAACCTTTTAATATATTCTCTCCCCACCTTCACTGTCGGAGTGTTGCTAGGTCTCCATCCTAATGGGACATGCTCACACAGTTATTTAGTTCAACAGGGAGTAACTGATGAGTATCAGACTCTTCTGTACAACACTGCATCTGTTTTCACATACTGAACTACAACACACATCCATACACTCAGACATGAACTAACTACTACAGTACATCCTGCTTGTATCCTTGACaaccctctagctctctctccttctcacacaTTAAAGCAAATCTCCCTTGGATCGAGGCCCAGTCTAATATCAAGACAAGGGTTGTCTTTAGGGGGGTTACTATAACAACCTGAATGGAATGTTGAGGTGCTCGTGACACACACATAAGCACTCTTGATTGCTCTCACACACAGTTCCCAGGTAAACAATTATTTTGAGGATGGACGGGGTGTGAGGGAGGGACACAGTGGGGTCGGAGCCTGGCAGGGCATCTGGCAGACAGCCAATTGGCGTGTCTGAAGGTCCCTCCTTGTGTCCTAGAGTATCATTCTGACGTCTCACCCTGGCAGCCAGGCATCAGGCTCACAGCAATGTCTGCTAGTATAAACCAATAGGAATAGGACATGGGTGGAGGAGCatgaaggtgtgtgtgcgtgtgtgtgtgtaggaggtcAAATTGGTCAAGTGTGTGCTCTTGTCTGGCATCTGTGTTTGTATGAGTGAGTGTGAgctcctgtatgtgtgtgtgtgtgtgtgtgtgttaaaagtgTGTTGCTTGGGTATATATGTCCCAGTCCGTAGTAGCTGCGACTTTGTGGCCGGAACATCCTTCAAAAACAGCCATTTAATATCCCTTTAATCTGGCCGTCTCTACCTTCCTGTGGCCACTAGGGCTCTGTGGGAGGGTCCCTAGGCACTAGGGCTCTCAGTCACTATGGTTAGGGACAGGGTTccatggggtggggggggctgtttgtCATAGAGAGGAGCCTCGACCCTCCAGTAGGTGCACAAcctcctcctcgctctcctcctcatcatcgtgACGACCTGGGAAGGAGGTGACTAGTTGAACATTATGTTGTCGGGGTCTTGGTTGGTCAACTGGGCCATATGACGAAGGATATCTTTTTTTGTGATAATACCAAGGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883017 lncRNA downstream 4368 15651030 ~ 15654406 (-) True G774933
TU883047 lncRNA downstream 23552 15634436 ~ 15635222 (-) True G774960
TU883041 lncRNA downstream 25347 15629043 ~ 15633427 (-) True G774957
TU883070 lncRNA upstream 29624 15691479 ~ 15691679 (-) True G774983
TU883079 lncRNA upstream 49591 15711446 ~ 15713654 (-) False G774989
TU883080 lncRNA upstream 49591 15711446 ~ 15712890 (-) True G774989
TU883095 lncRNA upstream 66830 15728685 ~ 15732759 (-) True G775003
TU883120 lncRNA upstream 111712 15773567 ~ 15773801 (-) True G775028
XM_021614882.2 mRNA downstream 50121 15605805 ~ 15608653 (-) True LOC110531598
XM_021614881.2 mRNA downstream 50386 15605030 ~ 15608388 (-) False LOC110531598
XM_036987420.1 mRNA downstream 58823 15595134 ~ 15599951 (-) True b4gat1
XM_021614868.2 mRNA downstream 80060 15569635 ~ 15578714 (-) False LOC110531593
XM_021614883.2 mRNA upstream 4635 15666490 ~ 15678852 (-) True mfap3l
XM_036989260.1 mRNA upstream 22784 15684639 ~ 15688747 (-) True LOC118966163
XM_021614885.2 mRNA upstream 35967 15697822 ~ 15739778 (-) False intu
XM_021614884.2 mRNA upstream 35967 15697822 ~ 15739780 (-) False intu
XM_021614887.2 mRNA upstream 35967 15697822 ~ 15740853 (-) False intu
TU883038 other downstream 32854 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 297455 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 404801 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 934252 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1404617 14249401 ~ 14254157 (-) True LOC118966145
TU883145 other upstream 120502 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 200465 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 250981 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1165198 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 1165319 16827174 ~ 16828561 (-) False LOC110531626

Expression Profile