RNA id: TU883149


Basic Information

Item Value
RNA id TU883149
length 542
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G775050
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15789611 ~ 15791739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttagcgtacattttccttttattaATCAAAATGACGCcggacaaaacaataaacactacaaaaacaaaccgtgaagctcaaaggctatgtgccctaaataaagtcaacctcccacaaagataggagggaaaaagggcaacctaagtatggttcccaatcagagacaacgatagacagctatccctgattgagaaccatacctggccaaaacatagaaatacaaaataatagatgacaaaacatagaatgcccaccccaaatcacaccctgaccaaaccaaatagagacattaaaaggctctctaagggtcagggcgtgacagggtgtgaatactttctgacggcTAAGTTAGCTCAAGgtacgcctgaaggtaccatggtcatctgtacaaacaatagtatgcaattataaacaccatgggaccacgcagccatcataccgctcaggaaggagaagcgttctttctcctagaggtgaacgtactgtggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883146 lncRNA downstream 4082 15782357 ~ 15785529 (-) True LOC110531603
TU883137 lncRNA downstream 13177 15776086 ~ 15776434 (-) True G775042
TU883120 lncRNA downstream 15810 15773567 ~ 15773801 (-) True G775028
TU883095 lncRNA downstream 56852 15728685 ~ 15732759 (-) True G775003
TU883079 lncRNA downstream 75957 15711446 ~ 15713654 (-) False G774989
TU883152 lncRNA upstream 1107 15792846 ~ 15793351 (-) True G775053
TU883153 lncRNA upstream 1732 15793471 ~ 15794006 (-) True G775054
TU883155 lncRNA upstream 2775 15794514 ~ 15794974 (-) True G775056
TU883161 lncRNA upstream 8156 15799895 ~ 15800176 (-) True G775062
TU883208 lncRNA upstream 10456 15802195 ~ 15813259 (-) False G775095
XM_021614892.2 mRNA downstream 1945 15781909 ~ 15787666 (-) False LOC110531603
XR_005053464.1 mRNA downstream 46061 15743342 ~ 15743550 (-) True LOC118966198
XM_021614887.2 mRNA downstream 48758 15697822 ~ 15740853 (-) False intu
XM_021614888.2 mRNA downstream 48758 15697822 ~ 15740853 (-) True intu
XM_021614884.2 mRNA downstream 49831 15697822 ~ 15739780 (-) False intu
XM_021614893.2 mRNA upstream 10243 15801982 ~ 15804621 (-) True LOC110531606
XM_036989276.1 mRNA upstream 18412 15810151 ~ 15813197 (-) True LOC118966175
NM_001124562.1 mRNA upstream 28672 15820411 ~ 15823218 (-) True cxcd2
XM_036987430.1 mRNA upstream 62478 15854217 ~ 15857206 (-) False LOC118966003
XM_036987431.1 mRNA upstream 76167 15867906 ~ 15891269 (-) False LOC110532935
TU883145 other downstream 2005 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 163691 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 428292 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 535638 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 1065089 14724054 ~ 14724522 (-) True G774427
TU883264 other upstream 70581 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 121097 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1035314 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 1035435 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 1035435 16827174 ~ 16828523 (-) True LOC110531626

Expression Profile