RNA id: TU883153


Basic Information

Item Value
RNA id TU883153
length 536
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G775054
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15793471 ~ 15794006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctatggattgagtagaatataatataactgTCCTGTTTGTCGTAaggattggaccaaggcgcagcgtgagtagagttccacataattttaataaatcgaaactcactgaacaaaacaacaaacaaccaaacgaAACGTGACGCTACTGATGTGCACTAAGgaaactatacatagacaagatcccacaacacaaatgaggaaaatggctacctaaatatgatccccaatcagagacaacgataaacagctgtctctgattgggaaccatatcaggccaacatagacatacaaacaccTCTAGACATACAAAatccctagacatacaaaaactagagtacccaccctagtcacaccctgacctaaccaaaatatatagaaaacagagatatctaaggtctgGGTGTGACAATAACTCTGTGCCAAGCATGAAAGTCATATATATACATGTTGTTATTGccatgcatgagatccccacattgtagcctgtagctttaatatattcactgatcatgtactctaccttggcaaataaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883152 lncRNA downstream 120 15792846 ~ 15793351 (-) True G775053
TU883149 lncRNA downstream 1732 15789611 ~ 15791739 (-) True G775050
TU883146 lncRNA downstream 7942 15782357 ~ 15785529 (-) True LOC110531603
TU883137 lncRNA downstream 17037 15776086 ~ 15776434 (-) True G775042
TU883120 lncRNA downstream 19670 15773567 ~ 15773801 (-) True G775028
TU883155 lncRNA upstream 508 15794514 ~ 15794974 (-) True G775056
TU883161 lncRNA upstream 5889 15799895 ~ 15800176 (-) True G775062
TU883208 lncRNA upstream 8189 15802195 ~ 15813259 (-) False G775095
TU883205 lncRNA upstream 8294 15802300 ~ 15804485 (-) False G775095
TU883210 lncRNA upstream 8294 15802300 ~ 15813259 (-) False G775095
XM_021614892.2 mRNA downstream 5805 15781909 ~ 15787666 (-) False LOC110531603
XR_005053464.1 mRNA downstream 49921 15743342 ~ 15743550 (-) True LOC118966198
XM_021614887.2 mRNA downstream 52618 15697822 ~ 15740853 (-) False intu
XM_021614888.2 mRNA downstream 52618 15697822 ~ 15740853 (-) True intu
XM_021614884.2 mRNA downstream 53691 15697822 ~ 15739780 (-) False intu
XM_021614893.2 mRNA upstream 7976 15801982 ~ 15804621 (-) True LOC110531606
XM_036989276.1 mRNA upstream 16145 15810151 ~ 15813197 (-) True LOC118966175
NM_001124562.1 mRNA upstream 26405 15820411 ~ 15823218 (-) True cxcd2
XM_036987430.1 mRNA upstream 60211 15854217 ~ 15857206 (-) False LOC118966003
XM_036987431.1 mRNA upstream 73900 15867906 ~ 15891269 (-) False LOC110532935
TU883145 other downstream 5865 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 167551 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 432152 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 539498 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 1068949 14724054 ~ 14724522 (-) True G774427
TU883264 other upstream 68314 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 118830 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1033047 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 1033168 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 1033168 16827174 ~ 16828523 (-) True LOC110531626

Expression Profile