RNA id: TU883211



Basic Information


Item Value
RNA id TU883211
length 913
lncRNA type read_through
GC content 0.43
exon number 4
gene id G775095
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15802195 ~ 15823389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTTTCGAGTCACTTTCACAGAGCTCAGACCATATAATATGTCTCTCTTACCATGATGCAGCAGACAGAATCTAAACTGGAGACGAGAAGAGCAACTCAACAAAGAAAACTGTTGAACTCAGAAATTCACTgcaactgaagaagaagaagactgcAGCTGGCTTACTGGTCTACCTTCTGATACAACAGCCACACTGCAACTACAGTCTACAGAGTCAAGATCATCATGAATACTGCAATGACTGTTATTGTTCTTCTGGTCTGCTCAGACGTCATCTGCATGATACAAGGGAGAGGTATACAATATCCTCGATGCCGCTGTCCTAAAGTACACGCAGGGGGGGTGAATATCAGGTTAATCAGGAAACTGACCTATTACCGTCCTCGCTCACACTGCTCTAAGGAAGAAGTCATTGTCACACTGAAAACCAGGGGTTCGCTCTGTCTCGACCCAAATGGGAATTTTGCCAAAACACTGATTGAAAGACAAATCAAAGTAAATCAACAGCGTCATAATCAACGTTCCATTGAGACTCTCTCCCCCCATACCACCCCTAGCACTTGATCACTCTTTGTCTGGCACTGGAAGCTGTGCCAACCTGCAACCCctctgctggcttgcctctgaggTGGGGTTGGCCCCAGTCAAGTCTTGGATGGTAGACAACAACCAGAACAAGTGGTGTTGGAGTGCCAGTAGGGGGCACTGTTCCCTCTGGTCCAAAGAGACTTCAATCAATGAGTCAGGACAGTGATAGGGACACTGCCCTACAAAGGgtattatttatttgtatatatttctatgttttatgtatacagtatagacattaaGGAAGAACATAATAGTATTGTTGATATAAAACCTGTCTTTGATATATTTATTGTCATGTATTTAATTTTTTCAAATAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU883205 lncRNA downstream 5678 15802300 ~ 15804485 (-) False G775095
TU883161 lncRNA downstream 9987 15799895 ~ 15800176 (-) True G775062
TU883155 lncRNA downstream 15189 15794514 ~ 15794974 (-) True G775056
TU883153 lncRNA downstream 16157 15793471 ~ 15794006 (-) True G775054
TU883152 lncRNA downstream 16812 15792846 ~ 15793351 (-) True G775053
TU883220 lncRNA upstream 3201 15826590 ~ 15826845 (-) True G775104
TU883221 lncRNA upstream 4855 15828244 ~ 15828548 (-) True G775105
TU883222 lncRNA upstream 6270 15829659 ~ 15830128 (-) True G775106
TU883230 lncRNA upstream 17272 15840661 ~ 15840864 (-) True G775113
TU883237 lncRNA upstream 21351 15844740 ~ 15844966 (-) True G775120
XM_021614893.2 mRNA downstream 5542 15801982 ~ 15804621 (-) True LOC110531606
XM_021614892.2 mRNA downstream 22497 15781909 ~ 15787666 (-) False LOC110531603
XR_005053464.1 mRNA downstream 66613 15743342 ~ 15743550 (-) True LOC118966198
XM_021614887.2 mRNA downstream 69310 15697822 ~ 15740853 (-) False intu
XM_021614888.2 mRNA downstream 69310 15697822 ~ 15740853 (-) True intu
XM_036987430.1 mRNA upstream 30828 15854217 ~ 15857206 (-) False LOC118966003
XM_036987431.1 mRNA upstream 44517 15867906 ~ 15891269 (-) False LOC110532935
XM_021614897.2 mRNA upstream 128539 15951928 ~ 15979801 (-) True LOC110531609
XM_021614898.2 mRNA upstream 168552 15991941 ~ 16005269 (-) False LOC110531610
XM_036987435.1 mRNA upstream 168552 15991941 ~ 16029878 (-) False LOC110531610
TU883145 other downstream 22557 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 184243 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 448844 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 556190 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 1085641 14724054 ~ 14724522 (-) True G774427
TU883264 other upstream 38931 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 89447 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1003664 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 1003785 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 1003785 16827174 ~ 16828523 (-) True LOC110531626

Expression Profile