RNA id: TU883240


Basic Information

Item Value
RNA id TU883240
length 2860
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G775123
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15853264 ~ 15856162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAATTCAGCTGGGTTGGGGTCGATTtgaattgaaggcagtcaattcaggaagtaaactgaaaatcCAATTCAATATTGAAAAAAAGGGTATCTATTTTTAATGACTTCTCAAGAAACTGAAAAGTAGAGGTTATTTATTTCAAAAGTTGTTCCATTTTATTTGAAATTCAAATCAGATCCTGAATTGACTGCCATCATACTCTAATGACGAGATGGTCTTAATGGGATTTGTTGTCGCAACAGTGGAAAGGCAGGCAGGAGGAAGAGCGATCAGGTGGAAACATTATAGCCAATGATAGGGCAGATATGCGTGTGAACAACAGACTCAACTCTGATATAAAGCCGGTTTTCTTAAAGTTACCCAGATGCCACGTACGTTCACTTATATCAATACATTCTAAAAACCTAACCATTATGAAACTTAAATTATATCAAATAAGACTCCCTTAGCAAATTAGCAATCCCATTTTCTGCTGACCAAATCCGACACTCTCATAGACCTATATTCAAAAAATCCCTACTTGGTCTACTTATTGCTGTATTCTTGCGTGAATAGATTTTGATGGGAGGGGAGCCTCTcgcttctcttcttcctctctgctTCAATTCAGAATGACCCCAACCCATGTATTCAAAATGGGTTCATGACCCATAATCCCTGACCAAAATGTTCAGTCCAAAATTATTTAAAATAATTTTTGCATACCTGAATGGTTAATTAAGTAAATATATAATGCTTTATTAATCACAAAAAAAGTAATTCAGTGTCAAACAGCAGAATAGGCTATGGAAGGAAATACAtaatacaacaaaatataaaAGTGACAAAACTGACCAACATTTActgtaattgtttttttttttaaatggcataCCTAAACGgttcaatatatactgtataatgttatattgaacACTGAGAAATAATTGTGTTTCACACAGCAGAATAGGCTATGGtaggaaaatacatgataaaacaaaatacaaaatgaAGTGACAGAACTATAACATGCAGTGATTTGGATTGAGGCTCACAAGATGATACAGTGTAAAGTATCATTTTCAAAGCCCAACAATTTCCATCCTCCACTATGACACCAGGGGGTGTCAAGCTTCAACCACAGACTTTCCTGATCAGCGTATTTACTTTTACCTGAGCTTGTTGTGTGCAGTTAGTACACCTGTGTAGTAGAGGCTGTTAAATGTTAGCCTTACATGGTCACATCACCTTTCCTGAGACCTGGGGGCCTATTCAAGACACTTAAAAGATACATTTTACATGGAGTAGGCTAAGACATCATTTAACTTGTGATGTAATGTGAAGAATATTGTCCTTTCTGAACAGTATATTTTGAAAAACGCTTTACCCCTCTGAATGCATGTAATTCCCAGTAAAATGAATGCATGTAAATCCCAGTAAATCCCAGTGATTAGAAATCGACAGGTTCCTAATCTGGTAGGCAGCACAGATAATGTCAAACATAACTGGAGAGTGGTCTCCTATTCTGGTTGGGGTCGGAATCCttaactacacaccaacctgcTCTTGTCAACTTGTCTTCTCTTCCAGGTCCTTTACTAGGAAAGGGTCTACTTCTCTCAGTACCTGGTAGAACTGCTCATGGGCACAAGCTCCCTTCAACAAAACCATTTCCAGCAGGGCCTGGTTCTTCAgtgtcttgtttgttttgttgtcCACCTCCTGCCTCTCCTCGTCATTCAGAACCCCTCGCTCCTGGAGAAGCCGAAGTATGGGCCGCAACAGTCCCAGACGGTCCTCCAACGCCAACTTGTGTTTCTTGAAGAATTTACCATTTGTGTCCTGTCTCCCATTCATGTTCACTGGTTTTGCAATGGTACCATAGCTGGCTTGCTTTCCCAACTTAGTCTTTAACTGTTCtatctctatatccctctccttcacctcatTCATCCAGTATTTTCTCTCCACTTTTGTGTCCTCATTGCTATCTTCTCCCATCAAGGGATGTTTCTGTTGGTTTTCTTCGGGGAGTCCTGgacagtctgtctgtgtctgtctgtctatatttgACAGACTGAGAGAGTCTGTCCCTGAATGCTGATTAAGACAAGACTGTAGTCTTGTTATATCCGCATTCTTCTGTTTAAGGATCTCTTTCAGTTTTTTGATTTCATTCTGAAGGGACTCGTTGGATCTGCCATTTTCAGTTGATAGACGTGAATAAAGTTTTGTAATTTTGTTCAAAATGTTTCCTTTCAGAGCGATCTTCTTCATCAACCTCTTGGATATCGTTAAAGAATCGGTGTCATCTTGCTCCACGTAGAAATTCTCATATTTGTTTTTAAGAGACATGTCCTCCAAtgtcttgatcacctccctgttTTGTTGCTTGCGTGGCTTGTTGTCATAGAGAACATGACACCggtttccacattttcttatcaAATGCTCAAATGTATCTTTGATTTTCTGCTCACTGAGGTCAAATTCAGCCAGTTTTTCCCCTTTTGTGAACAACACCACAGTATAATCCCATACTTCCTTGGTAAGCAGATCTTCCAGTATATTCTGCTCACCCATATTAAAACTATACTTTTTAGAGGTGGATTCAATGACCAAGAGGACAGCATTAGGTCCGTCTTTAAATGACTTAACAGAGTCTTGGATCTGCCGCTTTATCTTCTTTTGACTGCTATAGAGTCCAGACTCACTCCAGCCTGGAGTGCGGATCACAGTTATTTTCTGATTTATTTTCTTCACACGTTGTTTATTACTGAATATCCAGAAAGAGGACTTCTTGTCAAGGATTATGTTTCCTACGGTACTCTTTCCAGCACCCTTACCTCCAATAAGCACAAAATCCAAACGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883238 lncRNA upstream 3519 15847653 ~ 15849745 (+) True G775121
TU883231 lncRNA upstream 11983 15841055 ~ 15841281 (+) True G775114
TU883194 lncRNA upstream 23136 15829705 ~ 15830128 (+) True G775085
TU883190 lncRNA upstream 25361 15827588 ~ 15827903 (+) True G775081
TU883187 lncRNA upstream 29176 15823851 ~ 15824088 (+) True G775078
TU883245 lncRNA downstream 3727 15859889 ~ 15860129 (+) True G775128
TU883246 lncRNA downstream 4307 15860469 ~ 15863832 (+) True G775129
TU883267 lncRNA downstream 8076 15864238 ~ 15864439 (+) True G775140
TU883270 lncRNA downstream 11745 15867907 ~ 15868816 (+) True G775143
TU883272 lncRNA downstream 14410 15870572 ~ 15871102 (+) True G775145
XM_021614890.2 mRNA upstream 155441 15692085 ~ 15697823 (+) False ino80b
XM_021614891.2 mRNA upstream 155446 15692086 ~ 15697818 (+) True ino80b
XM_021614872.2 mRNA upstream 193170 15629032 ~ 15660094 (+) False clcn3
XM_021614879.2 mRNA upstream 193170 15629032 ~ 15660094 (+) False clcn3
XM_036987423.1 mRNA upstream 198757 15629032 ~ 15654507 (+) False clcn3
trnav-uac-14 mRNA downstream 264802 16120964 ~ 16121036 (+) True trnav-uac-14
trnav-uac-15 mRNA downstream 273568 16129730 ~ 16129802 (+) True trnav-uac-15
trnak-cuu-3 mRNA downstream 276642 16132804 ~ 16132876 (+) True trnak-cuu-3
trnan-guu-4 mRNA downstream 278135 16134297 ~ 16134370 (+) True trnan-guu-4
trnan-guu-5 mRNA downstream 287338 16143500 ~ 16143573 (+) True trnan-guu-5
TU881932 other upstream 352188 15471507 ~ 15501076 (+) False LOC110531590
TU881976 other upstream 387640 15465360 ~ 15465624 (+) True G774065
TU881923 other upstream 476076 15375224 ~ 15377188 (+) True G774021
TU881866 other upstream 554050 15298458 ~ 15299214 (+) True G773983
TU881409 other upstream 1469098 14382670 ~ 14384166 (+) True G773601
TU883269 other downstream 9927 15866089 ~ 15866708 (+) True G775142
TU883454 other downstream 330114 16186276 ~ 16187450 (+) True G775306
TU883480 other downstream 381212 16237374 ~ 16239534 (+) False LOC110532936
TU883479 other downstream 381293 16237455 ~ 16239534 (+) False LOC110532936
TU883488 other downstream 381293 16237455 ~ 16239758 (+) False LOC110532936

Expression Profile