RNA id: TU883728


Basic Information

Item Value
RNA id TU883728
length 455
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G775524
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15899025 ~ 15899479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacaaataatcttcgagagccttacgttcgggagccgacagagagtatagtctaccccggggggggtggttcccggaaggagatcaatactacaatcatacgaccggtgtggaggaagagaggtggccctggaccgactgaacaccgtgcgcagatcgtgatattcctccggcacccctgtcaaatcaccaggctcctcctgtgaagaagagacagaggaaacaggagggatagcagacattaaacatttcacatgacaagagacgttccaggagaggatagaattacctgaccaattaatggaaggattatgacaaactagccagggatggcccaaaacaacaggtgtaaaaggtgaacgaaaaattaaaaaagaaatggtttcactatgattaccagaaacagtgagggttaaaggtagcgtctcacgctgaatcctggggagaggactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883727 lncRNA downstream 815 15897934 ~ 15898210 (-) True G775523
TU883713 lncRNA downstream 19487 15879339 ~ 15879538 (-) True G775511
TU883707 lncRNA downstream 30895 15867907 ~ 15868130 (-) True LOC110532935
TU883253 lncRNA downstream 41826 15856779 ~ 15857199 (-) True LOC118966003
TU883237 lncRNA downstream 54059 15844740 ~ 15844966 (-) True G775120
TU883729 lncRNA upstream 1413 15900892 ~ 15901203 (-) True G775525
TU883742 lncRNA upstream 26748 15926227 ~ 15926590 (-) True G775538
TU883745 lncRNA upstream 31146 15930625 ~ 15930937 (-) True G775541
TU883718 lncRNA upstream 51316 15950795 ~ 15951787 (-) True G775516
TU883762 lncRNA upstream 68606 15968085 ~ 15968752 (-) True G775558
XM_036987431.1 mRNA downstream 7756 15867906 ~ 15891269 (-) False LOC110532935
XM_036987430.1 mRNA downstream 41819 15854217 ~ 15857206 (-) False LOC118966003
NM_001124562.1 mRNA downstream 75807 15820411 ~ 15823218 (-) True cxcd2
XM_036989276.1 mRNA downstream 85828 15810151 ~ 15813197 (-) True LOC118966175
XM_021614893.2 mRNA downstream 94404 15801982 ~ 15804621 (-) True LOC110531606
XM_021614897.2 mRNA upstream 52449 15951928 ~ 15979801 (-) True LOC110531609
XM_021614898.2 mRNA upstream 92462 15991941 ~ 16005269 (-) False LOC110531610
XM_036987435.1 mRNA upstream 92462 15991941 ~ 16029878 (-) False LOC110531610
XM_036987437.1 mRNA upstream 92462 15991941 ~ 16029878 (-) False LOC110531610
XM_036987436.1 mRNA upstream 92462 15991941 ~ 16029880 (-) False LOC110531610
TU883264 other downstream 35191 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 111419 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 273105 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 537706 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 645052 15238058 ~ 15253973 (-) True G774562
TU883736 other upstream 13357 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 927574 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 927695 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 927695 16827174 ~ 16828523 (-) True LOC110531626
TU884616 other upstream 965988 16865467 ~ 16866034 (-) True G776294

Expression Profile