RNA id: TU884616


Basic Information

Item Value
RNA id TU884616
length 568
RNA type TUCP
GC content 0.54
exon number 1
gene id G776294
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16865467 ~ 16866034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggccaccattgttcctgttcccaagaaagctaaggtaactgagctaaacgactaccgccccgtagcactcacttccgtcatcatgaagtgctttgagagactagtcaaggaccatatctcctccaccctacctgacaccctagacccactccaatttgcttaccgcccaaataggtccacagacgatgcaatatcaaccacactgcacactgccctaacccatctggacaagaggaatacctatgtgagaatgctgttcattgactacagctcggcattcaacaccatagtaccctccaagctcgtcatcaagctcgagaccctgggtctcgaccccgccctgtgcaactgggtattggacttcctgacgggccgcccccaggtggtgagggtaggcaacaacatctccaccccgctgatcctcaacactggggccccacatgggtgcgttctgagccctctcctgtactccctgttcacccacgactgcgtggccacgcacgcctccaactcaatcatcaagtttgcggacgacacaacagtggtaggcttgattaccaacaacgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884615 lncRNA downstream 2792 16862370 ~ 16862675 (-) True G776293
TU884610 lncRNA downstream 11403 16853844 ~ 16854064 (-) True G776288
TU884566 lncRNA downstream 12839 16852308 ~ 16852628 (-) True G776246
TU884608 lncRNA downstream 14857 16850302 ~ 16850610 (-) True G776286
TU884607 lncRNA downstream 16321 16848908 ~ 16849146 (-) True G776285
TU884617 lncRNA upstream 390 16866424 ~ 16866680 (-) True G776295
TU884629 lncRNA upstream 38387 16904421 ~ 16904688 (-) True G776307
TU884632 lncRNA upstream 57517 16923551 ~ 16925938 (-) True G776310
TU884567 lncRNA upstream 86372 16952406 ~ 16953579 (-) True G776247
TU884654 lncRNA upstream 105000 16971034 ~ 16971531 (-) True G776329
XM_021614927.2 mRNA downstream 36884 16827133 ~ 16828583 (-) False LOC110531626
XM_036987454.1 mRNA downstream 114173 16595063 ~ 16751294 (-) True LOC110532940
XM_036987453.1 mRNA downstream 114174 16595063 ~ 16751293 (-) False LOC110532940
LOC118966166 mRNA downstream 283662 16580259 ~ 16581805 (-) True LOC118966166
XM_036989264.1 mRNA downstream 291575 16555795 ~ 16573892 (-) True LOC118966165
XM_021614929.2 mRNA upstream 20494 16886528 ~ 16891710 (-) True LOC110531628
XM_021614940.2 mRNA upstream 42804 16908838 ~ 16913877 (-) False LOC110531631
XM_021614939.2 mRNA upstream 42804 16908838 ~ 16913879 (-) False LOC110531631
XM_021614938.2 mRNA upstream 42804 16908838 ~ 16913947 (-) False LOC110531631
XM_021614937.2 mRNA upstream 42804 16908838 ~ 16913948 (-) True LOC110531631
TU884558 other downstream 36906 16827174 ~ 16828561 (-) False LOC110531626
TU884559 other downstream 36944 16827053 ~ 16828523 (-) False LOC110531626
TU884560 other downstream 36944 16827174 ~ 16828523 (-) True LOC110531626
TU883736 other downstream 952173 15912836 ~ 15913294 (-) True G775532
TU883264 other downstream 1001633 15862320 ~ 15863834 (-) True G775139
TU884666 other upstream 143978 17010012 ~ 17014685 (-) True G776340
TU884682 other upstream 159346 17025380 ~ 17025813 (-) True G776355
TU884794 other upstream 379400 17245434 ~ 17245797 (-) True G776461
TU885013 other upstream 453581 17319615 ~ 17320373 (-) True G776652
TU885001 other upstream 479444 17345478 ~ 17354347 (-) False G776642

Expression Profile