RNA id: TU884632


Basic Information

Item Value
RNA id TU884632
length 2220
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G776310
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16923551 ~ 16925938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGAGTCAAATGACTTATTGTAGTGTTCAACTTACATGAACTGTAGACTGGATAGATCCATATGCCTTATATAGCCATTGAGTCAATCCCAACAAATTCACtttagtgtaaaaaaaaaaaaacaacatgaaaAGCTTTCAAAAATACATTCTGGTACAAAAAAGGGAAAAATCAAATGTAGCTTAATCAAACTAACTGCTCTTCTCCATTTGTTCTGTTCAAACATTGTAGTAAAATTGAAATCACGGTGTGAAGTGAAAACATCCCTGGTTAAATGTGCATATATAACAAATATAGCAACTTAAAGCCATGCAGATCACAAAGCCACTAGGAAaaatgataaatacaattgttatTAATTATGATGACGCCTTTCTATTATTAGGCCCTCCGGCTATGGATGTGACTTTACTGTGCAGGCAGGCATTCTGTAGAAACCCTGCTACTTTCCACTAGGGGGAGCACAAAGGCAAAACACTAGTGTTTGACAAAGCTACTTCCTACTTTTTTTGGCACAGACGCATATTTGTTCATTTCACCCTCCTATCACTGCTGCAGAGTCAGACAGCAATACTAGGGAGGGTGGCAGCATTGACTTTGCAGGGTGCGATTAGTCTTTCAACAATAGGAAAGCCTAGAAGCCTGCGCCCCAATCATACCTTAGCCCCCTATGCACTTCTTATTAGGATCTGAGAGGATTGGGTAAGAGTAGCCCATGAAGCAATATGGCGATACTTCcacctagcctatcagaggctACAGGGAACTAGATAGGTAGGAGCAATGCTTGGGCACAGAAGATTAGTTTAAGCATTGACTTAAGGAGGGCGATGGTGACAAAGATTAACTTCATGGAGATACACACGCACTACAGAAATACCCCATTTGGCAAGTCTGCAACCCACCTGTCTGCTATGGATGCCTCACTGACAATAGAGTTGAATAGAAAACAGACAGGCAACAGTACACCAGCATGTCTGTCTGGGAGCTACCCGCATAGACAAAAGACAACCCTTTCTTTCTCGTCCTTTGGACAACATGTCGGGGACTGTGTAGGAAAGTGAGGGTGTGTGACGGAAGGTGTAATATGTGTGAGAAAGCgagaggaaagggagaaatgAAAAGCGAGACAGGTGTAGACAGGTAAAAGTTGGAATACAGGTTCTTCCCTCTCGATGGCCCAACCGTGGGAAAGGGCATGCCTGACTGAGCCCGCTCTTGCACCACTCCAACAACAGGTTACTTGAAACCAATCTCAGTCCCACATAGAATTCTTAATCTTCTTTCCAATCCCCCTCTTCCAGACTACAAGCTGGGAAACTGAAGGGGTAAAAGAGTAGCCATCTTGTCATCTTGCAAGCTCCTATGGTCAACGTCCTCTGGATAATACAAGTTTTACACAATCTGCAATGCAACACCAGGCAGAAACACACAGTAATGCTGCCACAGCATTTATATACAGACCCACCACCTGCACCTTCATCCAGCTCTCCCTGTTCTCCTCCATCGCAACAAACAGGATGTGGGCACACTTGCTATttttgagagagggggggggggtggagagttACTTCAAATAAATAAGGATGCAAAGATAAGAAAACAAATGTCAAAGGAAGAGGAACGTATGGCAACCAACCAGAACTAGGCTGTCTCCCATAATACGGTGGCCCAAAAGGGACACTCAATAATGTCACAAACCTGGTTCAAACATGAGCAAAACCAAACATCCATCAATCAAATAAGTTAGACACACAACGAGACAACTGTGCTTGGCAGTTGGCACTAAGAGCACAGAAGTCAATAAGTATAAAAACAAAGCCCAACCAACACACACAAAATCTAACTCAATGACAAATTTGAGGCACAGATCTCAGTTCTTCTTCAGCACTGATAATCAATGATTCCAAGTCACTTACTTCCAACGTCAAACCATTCAATTAAAAAGACCACACATTGAAACAACTATTAAggcagcatttcccaaactcggtcctcgactAAGGCATTTCAAGAAGAGAAGTTGAAGAAATATTGTCAAGATATCTCTGCGAGGCGCTTTAGCAGGCTGGAGAATCCTGCGGCATGCTGGGACAGCTCTGCCACGCGGTCCACCATTTCCTGGGTGGCAGAGACCGATGGATAGTTTTGTGCTGCCCCCTTTGTAGCCACGACGACAGCCTTCAGGGCCTGACACAGACGCCCCCCTGAGGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884629 lncRNA downstream 18863 16904421 ~ 16904688 (-) True G776307
TU884617 lncRNA downstream 56871 16866424 ~ 16866680 (-) True G776295
TU884615 lncRNA downstream 60876 16862370 ~ 16862675 (-) True G776293
TU884610 lncRNA downstream 69487 16853844 ~ 16854064 (-) True G776288
TU884566 lncRNA downstream 70923 16852308 ~ 16852628 (-) True G776246
TU884567 lncRNA upstream 26468 16952406 ~ 16953579 (-) True G776247
TU884654 lncRNA upstream 45096 16971034 ~ 16971531 (-) True G776329
TU884673 lncRNA upstream 77858 17003796 ~ 17004079 (-) True G776346
TU884674 lncRNA upstream 78404 17004342 ~ 17004571 (-) True G776347
TU884677 lncRNA upstream 90012 17015950 ~ 17016162 (-) True G776350
XM_021614937.2 mRNA downstream 9603 16908838 ~ 16913948 (-) True LOC110531631
XM_021614938.2 mRNA downstream 9604 16908838 ~ 16913947 (-) False LOC110531631
XM_021614939.2 mRNA downstream 9672 16908838 ~ 16913879 (-) False LOC110531631
XM_021614940.2 mRNA downstream 9674 16908838 ~ 16913877 (-) False LOC110531631
XM_021614929.2 mRNA downstream 31841 16886528 ~ 16891710 (-) True LOC110531628
XM_021614944.2 mRNA upstream 27835 16953773 ~ 16966119 (-) False LOC110531634
XM_036987467.1 mRNA upstream 27835 16953773 ~ 16966130 (-) False LOC110531634
XM_036987468.1 mRNA upstream 27835 16953773 ~ 16966223 (-) True LOC110531634
XM_021614947.2 mRNA upstream 56772 16982710 ~ 17003093 (-) True LOC110531636
XM_021614950.2 mRNA upstream 102664 17028602 ~ 17043712 (-) False LOC110531638
TU884616 other downstream 57517 16865467 ~ 16866034 (-) True G776294
TU884558 other downstream 94990 16827174 ~ 16828561 (-) False LOC110531626
TU884559 other downstream 95028 16827053 ~ 16828523 (-) False LOC110531626
TU884560 other downstream 95028 16827174 ~ 16828523 (-) True LOC110531626
TU883736 other downstream 1010257 15912836 ~ 15913294 (-) True G775532
TU884666 other upstream 84074 17010012 ~ 17014685 (-) True G776340
TU884682 other upstream 99442 17025380 ~ 17025813 (-) True G776355
TU884794 other upstream 319496 17245434 ~ 17245797 (-) True G776461
TU885013 other upstream 393677 17319615 ~ 17320373 (-) True G776652
TU885001 other upstream 419540 17345478 ~ 17354347 (-) False G776642

Expression Profile