RNA id: TU884666



Basic Information


Item Value
RNA id TU884666
length 1774
RNA type TUCP
GC content 0.46
exon number 2
gene id G776340
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17010012 ~ 17014685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAAAAGTGCAAATTGTTTAATCTCTGTGGATTTGTCCACATCTTTGCTATGTACAGTGAAATAGACCCTAGTaaaatctctctctccaaccttaTCACTACATTGCAAGTTTTAAACATATCATCCTCCAACCACTATGTTTAATTGAATACATTCAGTACAACCCAGGCAAACAGAACAACaatttaagattttttttaaagtacatttCTGAAGGATAAAAGCGGAAAAACTAATAAAAGATACGATGTTAAAAATGGCAGACTAAAAAGTCTCTTAATTTGCTATATGTTCACTGTGTGAAAGCGTGGTAGAGTGGATTCCATTCACAAAGGGCTGAGAATTTAAGTCGGGGTTGTTGTGACCGTGGGCCCTGGGGGGCCTCATCTTTCTGTGTGCGGTTGTGCACTTCACAGGTCTAACCCAACCTCAGGCACCAAGAGAGATTGTCTTGTGAGCCGAGACACAATTTGTCTACTAGAGAACTACATTATAAAACATTCATACATCACACTTGCAAGTGCATACGAAACTATACACGTCAGTTATGCCATACGTACACTAACCAGGAGGGTCCCCAAAAATTATTGCCAGCTTGCAGAATTGACATGCAATTTATCCATTATGAAAGCAATATAAAACACAGTCTGTGTGTGAGAAGGTGGGTGTTCCTTTTTGTCCACATATTTGggacagtgtgtacagtatgtgtgtcatCATTCAAATTCATCAACTGTAGCAAGCTTCTGAAAAGGCACTTAGATGGGAGATGAGAACTATACATGGGATAGTGTCTACACAGGACATCTACATATCCTTACACTGGCCCCCATATGCTCACCCTTACATGACGCATTCACACATATGCtgtcacacaaagacatgaactCTTTCACGTGCTAAAACCAATCATTCACTTGACAGTaaattatatattataaaccggGTGGTTTTGAGCCCTgattgctgattggctgaaagccatggtatatcagactgtataccacgtgtatgacaaaacatttatttctactgctgtaattacgttggtaaccagtttataatagcaataatgaacctctggggtttgtggtatatggccaatataccacggctaagggctggaTCCAGGCACTTCGTGTTGCGTcctgcataagaacagcccttaaccgtggtatattagccatataccacaaactccAGAGGTGCCTCATTGCTTAAATTAGATCATGAGGGAGAGATTTTCTGTGCAAATTTCACCTCTTTCAGACTATATCTGGATAAGTGCACATCCAACACACAaataccctaatacacacacacacagccctattccctacctgTTGCTGTCGCAGTGGAAGGTCCCAGGTTGACATATGGTACAGTCTTTTTCGTCGCTCCCGTCAGCACAGTACAGCTGGTAGTTACACCTCTCCTTGGCAGGGAAGCACACCGGACGCCCGATGAAGTTATGACCCGCCAGCACCGCCCGCTGCCCCACCCCTCCGCAAGCAAACTGGTCCCTGGGACACCCCCTGCATCCCGCCTCATCATGCCCCGTCTCAGGACAGTCCCAGCGCCCGTCACACTTCTGTTCCTGGGTGTAGCAGCCCCCCGCGGCACCCCCACATTTACCCTCCCAGGGGGGGCAGTAGCCCCCGACACGGTAGGTGGCGTTGAAGCCCAGCCCCTCCGAGCCGGGAAGCGTGTGATAGGTCAGGGAGAGAAGGCCGGTCCGGGACTCAACCTGGATGGCCTTGTAGCTGGACTCGCT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU884674 lncRNA downstream 5441 17004342 ~ 17004571 (-) True G776347
TU884673 lncRNA downstream 5933 17003796 ~ 17004079 (-) True G776346
TU884654 lncRNA downstream 38481 16971034 ~ 16971531 (-) True G776329
TU884567 lncRNA downstream 56433 16952406 ~ 16953579 (-) True G776247
TU884632 lncRNA downstream 84074 16923551 ~ 16925938 (-) True G776310
TU884677 lncRNA upstream 1265 17015950 ~ 17016162 (-) True G776350
TU884679 lncRNA upstream 3324 17018009 ~ 17018236 (-) True G776352
TU884680 lncRNA upstream 7959 17022644 ~ 17022982 (-) True G776353
TU884701 lncRNA upstream 26395 17041080 ~ 17041359 (-) True G776370
TU884702 lncRNA upstream 27292 17041977 ~ 17043070 (-) True G776371
XM_021614947.2 mRNA downstream 6919 16982710 ~ 17003093 (-) True LOC110531636
XM_036987468.1 mRNA downstream 43789 16953773 ~ 16966223 (-) True LOC110531634
XM_036987467.1 mRNA downstream 43882 16953773 ~ 16966130 (-) False LOC110531634
XM_021614944.2 mRNA downstream 43893 16953773 ~ 16966119 (-) False LOC110531634
XM_021614937.2 mRNA downstream 96064 16908838 ~ 16913948 (-) True LOC110531631
XM_021614950.2 mRNA upstream 13917 17028602 ~ 17043712 (-) False LOC110531638
XM_021614951.2 mRNA upstream 13917 17028602 ~ 17043714 (-) False LOC110531638
XM_021614952.2 mRNA upstream 13917 17028602 ~ 17043723 (-) True LOC110531638
XM_036987476.1 mRNA upstream 36064 17050749 ~ 17064251 (-) False LOC110532941
XM_036987475.1 mRNA upstream 36065 17050750 ~ 17064251 (-) True LOC110532941
TU884616 other downstream 143978 16865467 ~ 16866034 (-) True G776294
TU884558 other downstream 181451 16827174 ~ 16828561 (-) False LOC110531626
TU884559 other downstream 181489 16827053 ~ 16828523 (-) False LOC110531626
TU884560 other downstream 181489 16827174 ~ 16828523 (-) True LOC110531626
TU883736 other downstream 1096718 15912836 ~ 15913294 (-) True G775532
TU884682 other upstream 10695 17025380 ~ 17025813 (-) True G776355
TU884794 other upstream 230749 17245434 ~ 17245797 (-) True G776461
TU885013 other upstream 304930 17319615 ~ 17320373 (-) True G776652
TU885001 other upstream 330793 17345478 ~ 17354347 (-) False G776642
TU885002 other upstream 330793 17345478 ~ 17354347 (-) True G776642

Expression Profile


TU884666 Expression in all Baseline Samples

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TU884666 Expression in each Bioproject

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TU884666 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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