RNA id: TU884702


Basic Information

Item Value
RNA id TU884702
length 1094
lncRNA type intronic
GC content 0.42
exon number 1
gene id G776371
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17041977 ~ 17043070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcaggggaagTCAGTCAAGGTCATTCAGGTAATATCTacaattgaagttggaagtttacatacacttatgttggagtcattaaaactcgtttttcaaccactccacaaatgtattgttaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtaatttttccaaaaattgtttacagacagattcagtatcacatttccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaaggatggcatggctttagaagcttctgataggctgaatgacatcatttgagttaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttggttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaagaacaattgtagacctccacaagtctggttcatcgttgggagcaatttccaaacgcctgaaggtaccacgtttagctgtacaaacaatagtacgcaagtataaacaacatgggaccacgcagtcgtcataccgctcaggaaggagacgcgttctgtctcctagagattaacgtactttggtgcaaaaagtccaaatcaatcccagaacaacagcaaaggaccttgtgaagatgttggaggaaacgggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggccactcagcaaggaagaagccactgctccaaaactgccataaaaaagccagactacggtttgcaactgcacatggggacaaagatcgtactttttggagaaatgtcttctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaggtgAGAGGCTTGCcaaccaaagaacaccatcccaaccatgaagcacaggggtggcagcatcatgttgtgggggtgctttgcaggggggactggtgcacttcacaaaatagatggcatcatgaggaggggaaattatgtggatatattaaagcaacatctcaagacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884701 lncRNA downstream 618 17041080 ~ 17041359 (-) True G776370
TU884680 lncRNA downstream 18995 17022644 ~ 17022982 (-) True G776353
TU884679 lncRNA downstream 23741 17018009 ~ 17018236 (-) True G776352
TU884677 lncRNA downstream 25815 17015950 ~ 17016162 (-) True G776350
TU884674 lncRNA downstream 37406 17004342 ~ 17004571 (-) True G776347
TU884703 lncRNA upstream 2194 17045264 ~ 17045470 (-) True G776372
TU884708 lncRNA upstream 6717 17049787 ~ 17050055 (-) True G776377
TU884689 lncRNA upstream 36129 17079199 ~ 17080885 (-) True LOC110531640
TU884724 lncRNA upstream 72515 17115585 ~ 17115820 (-) True G776393
TU884727 lncRNA upstream 85527 17128597 ~ 17129233 (-) True G776396
XM_021614947.2 mRNA downstream 38884 16982710 ~ 17003093 (-) True LOC110531636
XM_036987468.1 mRNA downstream 75754 16953773 ~ 16966223 (-) True LOC110531634
XM_036987467.1 mRNA downstream 75847 16953773 ~ 16966130 (-) False LOC110531634
XM_021614944.2 mRNA downstream 75858 16953773 ~ 16966119 (-) False LOC110531634
XM_021614937.2 mRNA downstream 128029 16908838 ~ 16913948 (-) True LOC110531631
XM_036987476.1 mRNA upstream 7679 17050749 ~ 17064251 (-) False LOC110532941
XM_036987475.1 mRNA upstream 7680 17050750 ~ 17064251 (-) True LOC110532941
XR_005053198.1 mRNA upstream 33860 17076930 ~ 17080792 (-) False LOC110531640
XM_021614955.2 mRNA upstream 263220 17306290 ~ 17317711 (-) True LOC110531642
XM_036987485.1 mRNA upstream 278361 17321431 ~ 17326579 (-) False LOC110531643
TU884682 other downstream 16164 17025380 ~ 17025813 (-) True G776355
TU884666 other downstream 27292 17010012 ~ 17014685 (-) True G776340
TU884616 other downstream 175943 16865467 ~ 16866034 (-) True G776294
TU884558 other downstream 213416 16827174 ~ 16828561 (-) False LOC110531626
TU884794 other upstream 202364 17245434 ~ 17245797 (-) True G776461
TU885013 other upstream 276545 17319615 ~ 17320373 (-) True G776652
TU885001 other upstream 302408 17345478 ~ 17354347 (-) False G776642
TU885002 other upstream 302408 17345478 ~ 17354347 (-) True G776642
TU885036 other upstream 374577 17417647 ~ 17431354 (-) True LOC110532943

Expression Profile