RNA id: TU884823



Basic Information


Item Value
RNA id TU884823
length 451
lncRNA type antisense_over
GC content 0.31
exon number 1
gene id G776483
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17330339 ~ 17330789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTGATATTGTAGTTTAATGGTTGCATTTTTTGTTACCAGAAGTTACTTTGATTTACAACTTAATGTTTGCACTTATTTTTCAATAAAATACAGCATGACAGTGTTATTTTTCACTATGGAAGGTTTGACTAACATCATGGTGAAAGATGATGAACTACATAAGCTAATGATAAAGCAAACGTTTAAATCATGTCCACATTGGAGACATGTTTGTTTTAATGTCTTGAACCCATGTCGGACACCATCTTCACCACAATTAATGATCATATTAGTAGTCGGTAATTTACAAAAtcccccagcctccctcccaCTTTAACAAAATACAAACAAAAATATTTATAAATATGTACAAACAGTGTATTCCTAAAGACTATTTAACAAACAAGGATCTACTATTTACAAAActaagataaaaaaataaataatcaaaaacAGGCACACAGGCTCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU884865 lncRNA upstream 1016 17328963 ~ 17329323 (+) True G776519
TU884862 lncRNA upstream 8549 17320610 ~ 17321790 (+) True G776516
TU884854 lncRNA upstream 14760 17305781 ~ 17315579 (+) True G776508
TU884849 lncRNA upstream 24824 17304112 ~ 17305515 (+) True LOC110532942
TU884837 lncRNA upstream 53698 17276440 ~ 17276641 (+) True G776496
TU884818 lncRNA downstream 23299 17354088 ~ 17354428 (+) True G776478
TU884871 lncRNA downstream 24443 17355232 ~ 17452622 (+) True G776524
TU884817 lncRNA downstream 34196 17364985 ~ 17369335 (+) True G776477
TU884878 lncRNA downstream 40982 17371771 ~ 17373560 (+) False G776530
TU884877 lncRNA downstream 41651 17372440 ~ 17373560 (+) True G776530
XM_036989266.1 mRNA upstream 24710 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 61305 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 64922 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 87789 17240870 ~ 17242550 (+) False LOC118966176
XM_036987482.1 mRNA upstream 107939 17202617 ~ 17222400 (+) True LOC118966008
XM_036987487.1 mRNA downstream 8483 17339272 ~ 17346251 (+) True LOC110531644
XM_021614973.2 mRNA downstream 856949 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 857964 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 920143 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 970579 18301368 ~ 18320759 (+) False LOC110531660
TU884850 other upstream 24824 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other upstream 24824 17297055 ~ 17305515 (+) False LOC110532942
TU884223 other upstream 646848 16683194 ~ 16683491 (+) True G775945
TU883556 other upstream 987529 16339694 ~ 16342810 (+) True LOC110532939
TU883487 other upstream 1079475 16248730 ~ 16250864 (+) True LOC110532936
TU884828 other downstream 49836 17380625 ~ 17394121 (+) True G776487
TU885190 other downstream 327408 17658197 ~ 17659145 (+) True G776818
TU885503 other downstream 671100 18001889 ~ 18002182 (+) True G777111
TU885507 other downstream 672478 18003267 ~ 18005668 (+) True G777113
TU885567 other downstream 777230 18108019 ~ 18108482 (+) True G777165

Expression Profile