RNA id: TU884817


Basic Information

Item Value
RNA id TU884817
length 3414
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G776477
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17364985 ~ 17369335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCCCAaaagttttattgcttatttgtATTGTTTTGACGTATGTGattatacaaaaaaatatatacaaaagatCATGTTAAAGAAATGGTTGCTTAAAAGAAATGAAATAAAGAATGGAAAATAACTTGAGAAACTCCTGAGGAATCCTCAGATGACGTACTGTATGATGTTTCCATGGGCAACACGTGAAACAGAAGCAAGAGTTACAACAATGACATGGCAGTTTTGAGATTAAAGAACTACAATGGCTATGATTGATATGGCACACTGGCATGATTTGAACATATCAAAAGTAGACAATATGCTTCAAACACAAAAGGGAAAACTCCTGGCAGATAggcactttaaaaaaaagttgtgtAGTAAGTGATTGGCAATCCTGGTGCTGGTATGTCATCAGTAGTACTGAGCGATTAACCAAAATGTtggttatttttttgtttttttaaaacaacTTATCGAAAGACGTTGGTTAAATgatttgaattccatttagttcggttcttttctgtgagctcaatgtgcagtttctgtagagattaaatcagatcaagcctgaactgaactgacttggaatgaaataatgaaGTCataaagtaaagtaatgtgaataaattatggttaataagtgataagcagtaaagGAGTGTCACTACCACCATGGGACttgtattaaatgttttattctgtgttgttacagcattcaacacacATAACGTATAGTGTATTATATAATCGAACGCAAAATCAAAAACCGTGATCATTTTTAATAATCGAACCCAAAACTGAACCGACCtgaaaaagcactaatcgctcagcactagtcGTCATGAAAATAGGCTGTGGCATTGCAGGGCAGTCCTCtctacttcttctctctctccatctcacaatCCACCATCATCCCCTTGTCATCACGGCAGTCCCCACAGAAGCAGCCGATGCAGCCGTTGACCACCTGGATGCCACAGTGATACATtcaatatttattatttattttacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgagacctggccaagataaagcaaagcagtgatgcacatacaacaacacagagttacacatggaataaacaaacgtacagtcaataatacagtagaaaaaaagtctatatacagtatgtgcaaatgaggtaggatactggaggtaaggcaataaataggccatagtggcgaaataattacaatataacagtttaacactggagtgacagatgtgcagaaggtgagtgtacaagtagagatactttggtgcaaaggagcaaaaatgaCATGCATCATTATGACAGTATGTCTATGCCCCAAaatgcaccttattccctttatagtgcactacttgtgaccagggcctatagagttctggtcaaaagtagcgcactagtatatagggaatagggtaccatttgggacatagcctaTGTGTTCCATTCAATTCTCTGACCTGGATACCACAGAGGATGAGTTGCAGGCCCCCCAGGCCCAGCGTGATGGAGAAGAGGACCAGGTGCCACAGGGCCGCATTGGCAGGGATCACACACAGGTTCCACAGAGAGTGGTCAAACAGGTAACTGCTGTTCCCACtatagaggagggggagagagggatgggaggagggaaGAAGAAAGGGGTGAAAAAGgacagggatggatgagagtggTTTTGGGATaagagggaagagatggagagtagagaggaaatGCAAAAGAAGGTTAGAGCAATGATGTAGTCCAATGTGttttacatagatacattatgAACAGAGGGGAGAAAGTAAAGTATTGAGGGAAAGTAAAGATTAAGAGGCAGGTttagtgaagagaggagaagttGAAAAGATGGGCAGAGAAGAGAGATGTTATTCAGTAAGTAGCAAAAGGGAGGACAGGTTAAAACAGTGCAGACATCTGTCATTATCATAATTTCAGTAATCAGCTGTCAAACGTGATTCCCTTCAACCACAGCATTATCTTTGACTCTGACTGCCCGTGCATGTACACCACAGAAACGCCAACATCCTTCTGTTGACTATTTCTACCATAAACGTGTTGCAACTCTGTCATGATGCCATTTAGCTGTTTGATATGTTATTAActatgtgacctgaccaggacaaACGACGGGCCTGGGCCTGGTTTAGTTGAGGTGATCAAGAAACATTCAGAGCCCTAGTGCTCCCAGACTGACTCTGTTTGACCACTCCCTGTGAGACCTGTGTGTGACCCCTGTCAATGCGGCCCTGTGGAACCTGGTCCTCTTCTCCATCACGCCGGGTGAgggcaagatggcgccgacagataaggcagctctgcttctagctcctaagcaactttgcagtatttagttttttttgtgtgttatttcttacattattagcccagcaAATGTTGTGTTTTTAAATATTGccagaaataacttttggatatcaaagcggcggtaactcaccagcattaagaccgggaatacgactttcctgggcaattgaactgattccagaggctgatccaaaacaTGCCGGCGGAGAAGaagtattcggagtggacttctagtccgactcaggaggcgtgcacatCATCccccgcttccgagtatattactcaattatgttcagtctctggataataaagtagaaAAGCTCAGGGCGAGAATCTCCTTCctgagagacatcagggattgtatcatactctgtttcacggaaacatggctttCTTGGGATATACTGTCtttgtccatacagccagctgggttctcagtacattggGCAGACACGAATAAAGAACTCTCGGGGAATAAGCAAGGTGGatgtgtatgtttcatgattaactactcatggtgtgattgtgataacatacataaactcaagtccttttgttcacccgacctagaatacctcacaatcaaatgccaaacttattacctcccaagagaattctcttcggttatagtcacagctgtgtatactccccctcaagccgataccacgacggtcctcaaagaacttcactggactttatgcaaactgaaaaccacatatcctgaggctgcatttattgtagctggggattttaacaaagcaaatttgaggaaaacgctaccgaagttctacTAACACCATGACTGTAGCACTCGCTCTAAGAAAACATTAGACCGCTGCTACTCAgctttttcctccctccctctgcaaatctgaccacgactccattttgctcctccctagctataggcagaaactcaaacaggaagttcTTCTTCTGTGTGTTTTATGGCGGCTACATCCCAAAAAGATGTGTTGCCGCCACCAACTGGACGGATTGAAACCAAAACAAGGTGAAAAGAAAATCCAATGTGGGGATTTCGAAAGACGTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884818 lncRNA upstream 10557 17354088 ~ 17354428 (+) True G776478
TU884823 lncRNA upstream 34196 17330339 ~ 17330789 (+) True G776483
TU884865 lncRNA upstream 35662 17328963 ~ 17329323 (+) True G776519
TU884862 lncRNA upstream 43195 17320610 ~ 17321790 (+) True G776516
TU884854 lncRNA upstream 49406 17305781 ~ 17315579 (+) True G776508
TU884878 lncRNA downstream 2436 17371771 ~ 17373560 (+) False G776530
TU884877 lncRNA downstream 3105 17372440 ~ 17373560 (+) True G776530
TU884906 lncRNA downstream 119976 17489311 ~ 17490326 (+) True G776555
TU884826 lncRNA downstream 129968 17499303 ~ 17500961 (+) True G776485
TU884951 lncRNA downstream 203305 17572640 ~ 17573045 (+) True G776598
XM_036987487.1 mRNA upstream 18734 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 59356 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 95951 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 99568 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 122435 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 818403 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 819418 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 881597 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 932033 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 933799 18303134 ~ 18320759 (+) True LOC110531660
TU884850 other upstream 59470 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other upstream 59470 17297055 ~ 17305515 (+) False LOC110532942
TU884223 other upstream 681494 16683194 ~ 16683491 (+) True G775945
TU883556 other upstream 1022175 16339694 ~ 16342810 (+) True LOC110532939
TU883487 other upstream 1114121 16248730 ~ 16250864 (+) True LOC110532936
TU884828 other downstream 11290 17380625 ~ 17394121 (+) True G776487
TU885190 other downstream 288862 17658197 ~ 17659145 (+) True G776818
TU885503 other downstream 632554 18001889 ~ 18002182 (+) True G777111
TU885507 other downstream 633932 18003267 ~ 18005668 (+) True G777113
TU885567 other downstream 738684 18108019 ~ 18108482 (+) True G777165

Expression Profile