RNA id: TU885132


Basic Information

Item Value
RNA id TU885132
length 1067
RNA type TUCP
GC content 0.50
exon number 3
gene id G776762
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17593472 ~ 17594666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctctcttcctggcttacatcctccctctctcaacctcctctctttccgtttctgtctctcttcccgtctcttcctctctcattcttcctGGCTCACATCCTCCATCTTTCAACCTCCTCTCCTtccgtttctgtctctcttcctgtctcttcctctctctctcttcctggctcacatcctccctctctcaacctcctctccttccgtttctatctctcttcctgtctcacatcctccctctctcaacctcctctccttccgtttctgtctctcttcctgtctcttcctctctctcccttcctgtcttcttatccctctctcaacctcctctccttccgtttctgtctctcttcctgtctcttcctctctctctcttccaggctcacatcctccctctctcaacctcctctccttccgtttctgtctctcttcctgtctcttcctccctctctcaacctcctctccttctgtttctgtctctcttcctgtctcttcctccctctctcaacatcctctccttctgtttctgtctctcttcctgtctctcttcctccctctctcaaccttctctccttctgtttctatctctcttcctgtctcacatcctccctctctaaacctcctctccttctttttctatctctcttcctgtctaacatcctccctctctcaacctcctctccttatgtttctatctctcttcctgtctcacatccttcctctctcaacctcctctAATTCCGGTtctatctctcttcctgtctcacatcctccctctctcaacctcctctccttctgtttctgtctctcttcctgtctcttcctctctcattcttcctggctcacatcctccctctctcaacTTCCTCTCTTtccgtttctgtctctcttcctgtctcttcctctctctcccttcctgtctcttcatccctctctcaacctcctctccttccgtttctgtctctcttcctgtctcttcctctctctctcttccaggctcacatcccccctctctcaacctcctctccttccGTTTCATTCTCTTTTCCTGTCTCTTCCGcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885124 lncRNA downstream 12558 17580239 ~ 17580914 (-) True G776757
TU885120 lncRNA downstream 19411 17572697 ~ 17574061 (-) True G776753
TU885045 lncRNA downstream 28078 17561206 ~ 17565394 (-) True G776684
TU885083 lncRNA downstream 112356 17477083 ~ 17481116 (-) True G776719
TU885079 lncRNA downstream 126677 17459171 ~ 17466795 (-) True G776715
TU885136 lncRNA upstream 2514 17597180 ~ 17597806 (-) True G776766
TU885139 lncRNA upstream 5064 17599730 ~ 17600116 (-) True G776768
TU885149 lncRNA upstream 14004 17608670 ~ 17608934 (-) True G776777
TU885170 lncRNA upstream 40243 17634909 ~ 17635455 (-) True G776798
TU885178 lncRNA upstream 50471 17645137 ~ 17645371 (-) True G776806
XM_036987492.1 mRNA downstream 45570 17402378 ~ 17547902 (-) False LOC110532943
XM_036987494.1 mRNA downstream 45570 17402378 ~ 17547902 (-) False LOC110532943
XM_036987491.1 mRNA downstream 161630 17402378 ~ 17431842 (-) False LOC110532943
XM_036987490.1 mRNA downstream 196244 17390090 ~ 17397228 (-) False tmem88b
XM_021614960.2 mRNA downstream 219824 17364983 ~ 17373648 (-) True tm4sf5
XM_036987495.1 mRNA upstream 329404 17924070 ~ 17925788 (-) True LOC118966010
XM_036987496.1 mRNA upstream 411967 18006633 ~ 18129483 (-) True LOC110531650
XM_036987498.1 mRNA upstream 535541 18130207 ~ 18136898 (-) False si:dkey-111f13.5
XM_036987497.1 mRNA upstream 535542 18130208 ~ 18138722 (-) True si:dkey-111f13.5
XR_002474734.2 mRNA upstream 553639 18148305 ~ 18154722 (-) False LOC110531652
TU885078 other downstream 129650 17458677 ~ 17463822 (-) True G776714
TU885036 other downstream 162118 17417647 ~ 17431354 (-) True LOC110532943
TU885001 other downstream 239125 17345478 ~ 17354347 (-) False G776642
TU885002 other downstream 239125 17345478 ~ 17354347 (-) True G776642
TU885013 other downstream 273099 17319615 ~ 17320373 (-) True G776652
TU885184 other upstream 60928 17655594 ~ 17655980 (-) True G776812
TU885186 other upstream 61322 17655988 ~ 17656325 (-) True G776814
TU885192 other upstream 64350 17659016 ~ 17659403 (-) True G776820
TU885195 other upstream 65024 17659690 ~ 17660078 (-) False G776822
TU885197 other upstream 65024 17659690 ~ 17660483 (-) False G776822

Expression Profile