RNA id: TU884967



Basic Information


Item Value
RNA id TU884967
length 362
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G776611
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17599695 ~ 17600727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taactttgtacagtactaatgcaattagtaatatcagtcacactacgaaatgctaccaaataaaccacaattcattcataatactgtgaatatatagtttcacagacatattgCTGCATTTGTTTCTGGTTTGTGTGAAATCGTAAAGAATAATATAAACCAGTCTACACACCACCAAGGAGGATTGGTTtagtcttgattcttggttgacagtgttgggggatgggtaatgtagtcttgagtCTTGGTTGACAATGTTGGGGGAAGGGtcatgtagtcttgactcttggttgacagtgttgcgggatgggtaatgtagtcttgactcttggttgacagtgttgggggatgggtaatgtagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU884961 lncRNA upstream 7049 17589621 ~ 17592646 (+) True G776606
TU884951 lncRNA upstream 26650 17572640 ~ 17573045 (+) True G776598
TU884826 lncRNA upstream 98734 17499303 ~ 17500961 (+) True G776485
TU884906 lncRNA upstream 109369 17489311 ~ 17490326 (+) True G776555
TU884878 lncRNA upstream 226135 17371771 ~ 17373560 (+) False G776530
TU885153 lncRNA downstream 15561 17616288 ~ 17616818 (+) True G776781
TU885162 lncRNA downstream 22537 17623264 ~ 17623514 (+) True G776790
TU885167 lncRNA downstream 32388 17633115 ~ 17633330 (+) True G776795
TU885176 lncRNA downstream 39933 17640660 ~ 17640906 (+) True G776804
TU885182 lncRNA downstream 52776 17653503 ~ 17653880 (+) True G776810
XM_036987487.1 mRNA upstream 253444 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 294066 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 330661 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 334278 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 357145 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 587011 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 588026 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 650205 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 700641 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 702407 18303134 ~ 18320759 (+) True LOC110531660
TU884828 other upstream 205574 17380625 ~ 17394121 (+) True G776487
TU884850 other upstream 294180 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other upstream 294180 17297055 ~ 17305515 (+) False LOC110532942
TU884223 other upstream 916204 16683194 ~ 16683491 (+) True G775945
TU883556 other upstream 1256885 16339694 ~ 16342810 (+) True LOC110532939
TU885190 other downstream 57470 17658197 ~ 17659145 (+) True G776818
TU885503 other downstream 401162 18001889 ~ 18002182 (+) True G777111
TU885507 other downstream 402540 18003267 ~ 18005668 (+) True G777113
TU885567 other downstream 507292 18108019 ~ 18108482 (+) True G777165
TU885818 other downstream 898887 18499614 ~ 18500018 (+) True G777396

Expression Profile