RNA id: TU885170


Basic Information

Item Value
RNA id TU885170
length 547
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G776798
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17634909 ~ 17635455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTTTCATCATGCACGTCATTCACCACCACATTGGTGTGTAACACCTACCTGGGTAATGCACGACACCCATTAGCCATCCTCCTGTGTTCCGGTCAAATTGGACCGATTTAaaagttttctctctgaaaaatgtagttcatttaatctgattgtcataaggttccatgactttgtccacacagggcatctgaacacacaaaatacatgctgatgattttcattacattttggctgttttatttaacttttgtacacctgcAGTGTTCCTGGtcaaaaatgaccggtcattagaaatgaatgggtgagtctacaattagtgtataaaattgagttcaggcacatacccattcatcagatggacacacttcctctcccagacccccacatgcatgtgtgtttgagcacacacacacacacacacacaacaatcgcaacattgtttcaataatatatagaacttttctcacagctctggtatataaagctttattgaggccttgctcacaattcatcccgtggcagcacaatgaccaaacaatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885039 lncRNA downstream 20730 17519943 ~ 17614179 (-) True G776678
TU885149 lncRNA downstream 25975 17608670 ~ 17608934 (-) True G776777
TU885139 lncRNA downstream 34793 17599730 ~ 17600116 (-) True G776768
TU885136 lncRNA downstream 37103 17597180 ~ 17597806 (-) True G776766
TU885124 lncRNA downstream 53995 17580239 ~ 17580914 (-) True G776757
TU885178 lncRNA upstream 9682 17645137 ~ 17645371 (-) True G776806
TU885188 lncRNA upstream 21153 17656608 ~ 17657040 (-) True G776816
TU885189 lncRNA upstream 21601 17657056 ~ 17657340 (-) True G776817
TU885191 lncRNA upstream 22347 17657802 ~ 17658268 (-) True G776819
TU885246 lncRNA upstream 60000 17695455 ~ 17695692 (-) True G776870
XM_036987492.1 mRNA downstream 87007 17402378 ~ 17547902 (-) False LOC110532943
XM_036987494.1 mRNA downstream 87007 17402378 ~ 17547902 (-) False LOC110532943
XM_036987491.1 mRNA downstream 203067 17402378 ~ 17431842 (-) False LOC110532943
XM_036987490.1 mRNA downstream 237681 17390090 ~ 17397228 (-) False tmem88b
XM_021614960.2 mRNA downstream 261261 17364983 ~ 17373648 (-) True tm4sf5
XM_036987495.1 mRNA upstream 288615 17924070 ~ 17925788 (-) True LOC118966010
XM_036987496.1 mRNA upstream 371178 18006633 ~ 18129483 (-) True LOC110531650
XM_036987498.1 mRNA upstream 494752 18130207 ~ 18136898 (-) False si:dkey-111f13.5
XM_036987497.1 mRNA upstream 494753 18130208 ~ 18138722 (-) True si:dkey-111f13.5
XR_002474734.2 mRNA upstream 512850 18148305 ~ 18154722 (-) False LOC110531652
TU885132 other downstream 40243 17593472 ~ 17594666 (-) True G776762
TU885078 other downstream 171087 17458677 ~ 17463822 (-) True G776714
TU885036 other downstream 203555 17417647 ~ 17431354 (-) True LOC110532943
TU885001 other downstream 280562 17345478 ~ 17354347 (-) False G776642
TU885184 other upstream 20139 17655594 ~ 17655980 (-) True G776812
TU885186 other upstream 20533 17655988 ~ 17656325 (-) True G776814
TU885192 other upstream 23561 17659016 ~ 17659403 (-) True G776820
TU885195 other upstream 24235 17659690 ~ 17660078 (-) False G776822
TU885197 other upstream 24235 17659690 ~ 17660483 (-) False G776822

Expression Profile