RNA id: TU885205


Basic Information

Item Value
RNA id TU885205
length 208
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G776829
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17663921 ~ 17664128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagaatcagcttcctatttcgcaacaaagcatccttcactcacgctgccaaacataccctcgtaaaactgactatcctaccgatcctttaCTACGGCGATGTcacttacaaaatagcctccaacactctactcagcaaattggatgcagtctatcacagtgccatccgttctgtcaccaaagccccatatactacccacccctgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885194 lncRNA upstream 3860 17659779 ~ 17660061 (+) False G776821
TU885193 lncRNA upstream 3860 17659842 ~ 17660061 (+) True G776821
TU885185 lncRNA upstream 7612 17656031 ~ 17656309 (+) True G776813
TU885182 lncRNA upstream 10041 17653503 ~ 17653880 (+) True G776810
TU885176 lncRNA upstream 23015 17640660 ~ 17640906 (+) True G776804
TU885211 lncRNA downstream 3612 17667740 ~ 17667940 (+) True G776835
TU885231 lncRNA downstream 19243 17683371 ~ 17683572 (+) True G776855
TU885267 lncRNA downstream 54258 17718386 ~ 17718602 (+) True G776891
TU885279 lncRNA downstream 64613 17728741 ~ 17728978 (+) True G776903
TU885280 lncRNA downstream 65289 17729417 ~ 17729704 (+) True G776904
XM_036987487.1 mRNA upstream 317670 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 358292 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 394887 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 398504 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 421371 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 523610 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 524625 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 586804 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 637240 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 639006 18303134 ~ 18320759 (+) True LOC110531660
TU885190 other upstream 4776 17658197 ~ 17659145 (+) True G776818
TU884828 other upstream 269800 17380625 ~ 17394121 (+) True G776487
TU884850 other upstream 358406 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other upstream 358406 17297055 ~ 17305515 (+) False LOC110532942
TU884223 other upstream 980430 16683194 ~ 16683491 (+) True G775945
TU885503 other downstream 337761 18001889 ~ 18002182 (+) True G777111
TU885507 other downstream 339139 18003267 ~ 18005668 (+) True G777113
TU885567 other downstream 443891 18108019 ~ 18108482 (+) True G777165
TU885818 other downstream 835486 18499614 ~ 18500018 (+) True G777396
TU885868 other downstream 992203 18656331 ~ 18657574 (+) True LOC110531664

Expression Profile