RNA id: TU885279


Basic Information

Item Value
RNA id TU885279
length 238
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G776903
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17728741 ~ 17728978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaaagacaggctatgtgctcactgcacacaaaataaggtggaaactgagctgcacttcctaacctcctgccaaatgtatggccatattagagacacatatttccctcagattacacagacaaagacaaagaatttgaaaacaaatccaattttgataaactcccatatctattgggtgaaataccagtgtgccatcacagcagcaagatgtgtgacctgttgccacaagaaaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885267 lncRNA upstream 10139 17718386 ~ 17718602 (+) True G776891
TU885231 lncRNA upstream 45169 17683371 ~ 17683572 (+) True G776855
TU885211 lncRNA upstream 60801 17667740 ~ 17667940 (+) True G776835
TU885205 lncRNA upstream 64613 17663921 ~ 17664128 (+) True G776829
TU885194 lncRNA upstream 68680 17659779 ~ 17660061 (+) False G776821
TU885280 lncRNA downstream 439 17729417 ~ 17729704 (+) True G776904
TU885314 lncRNA downstream 29985 17758963 ~ 17759182 (+) True G776938
TU885337 lncRNA downstream 49811 17778789 ~ 17779065 (+) True G776959
TU885346 lncRNA downstream 72064 17801042 ~ 17801315 (+) True G776968
TU885386 lncRNA downstream 104883 17833861 ~ 17834230 (+) True G777003
XM_036987487.1 mRNA upstream 382490 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 423112 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 459707 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 463324 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 486191 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 458760 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 459775 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 521954 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 572390 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 574156 18303134 ~ 18320759 (+) True LOC110531660
TU885190 other upstream 69596 17658197 ~ 17659145 (+) True G776818
TU884828 other upstream 334620 17380625 ~ 17394121 (+) True G776487
TU884850 other upstream 423226 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other upstream 423226 17297055 ~ 17305515 (+) False LOC110532942
TU884223 other upstream 1045250 16683194 ~ 16683491 (+) True G775945
TU885503 other downstream 272911 18001889 ~ 18002182 (+) True G777111
TU885507 other downstream 274289 18003267 ~ 18005668 (+) True G777113
TU885567 other downstream 379041 18108019 ~ 18108482 (+) True G777165
TU885818 other downstream 770636 18499614 ~ 18500018 (+) True G777396
TU885868 other downstream 927353 18656331 ~ 18657574 (+) True LOC110531664

Expression Profile