RNA id: TU885513


Basic Information

Item Value
RNA id TU885513
length 241
lncRNA type intronic
GC content 0.31
exon number 1
gene id G777119
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18022159 ~ 18022399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaatataatgtttacataccctacattattcatctcatatgtatatgtatatactgtactctatatcatctactgcatctttatgtaatacatgtatcactagccactttaactatgccactttgtttacatactcatctcatatgtatatactgcactcaataccatctactgtatcttgtctATGcctctctgtaccatcactcattcatatatctttatgtacatattctttatccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885512 lncRNA upstream 75 18021802 ~ 18022084 (+) True G777118
TU885511 lncRNA upstream 2093 18019753 ~ 18020066 (+) True G777117
TU885508 lncRNA upstream 13563 18006721 ~ 18008596 (+) True G777114
TU885486 lncRNA upstream 58623 17963183 ~ 17963536 (+) True G777094
TU885405 lncRNA upstream 174925 17846982 ~ 17847234 (+) True G777022
TU885521 lncRNA downstream 15243 18037642 ~ 18037866 (+) True G777127
TU885547 lncRNA downstream 43397 18065796 ~ 18070684 (+) True G777146
TU885562 lncRNA downstream 81177 18103576 ~ 18103799 (+) True G777160
TU885563 lncRNA downstream 82782 18105181 ~ 18105398 (+) True G777161
TU885564 lncRNA downstream 83156 18105555 ~ 18105762 (+) True G777162
XM_036987487.1 mRNA upstream 675908 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 716530 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 753125 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 756742 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 779609 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 165339 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 166354 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 228533 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 278969 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 280735 18303134 ~ 18320759 (+) True LOC110531660
TU885507 other upstream 16491 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 19977 18001889 ~ 18002182 (+) True G777111
TU885190 other upstream 363014 17658197 ~ 17659145 (+) True G776818
TU884828 other upstream 628038 17380625 ~ 17394121 (+) True G776487
TU884851 other upstream 716644 17297055 ~ 17305515 (+) False LOC110532942
TU885567 other downstream 85620 18108019 ~ 18108482 (+) True G777165
TU885818 other downstream 477215 18499614 ~ 18500018 (+) True G777396
TU885868 other downstream 633932 18656331 ~ 18657574 (+) True LOC110531664
TU887666 other downstream 1795289 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 1795289 19817688 ~ 19824606 (+) True LOC110531694

Expression Profile