RNA id: TU885563


Basic Information

Item Value
RNA id TU885563
length 218
lncRNA type intronic
GC content 0.45
exon number 1
gene id G777161
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18105181 ~ 18105398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagatagaggaggagagagagaagggtttaGAGATCAGAAGGCGGAAACACGGCTAacgggaagagagggggatggagaggggaagatGAATTCAGCTATGTTGAGCTTCTCTGAGACAGGAGGGTGAAAGATGAGGATTGAAAGACAAGAAATGTCTGAACTTTGAGAAGGAAGGATCATGTTAGAAAGTAGGAGAGCGAAAAGAAGAGTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885562 lncRNA upstream 1382 18103576 ~ 18103799 (+) True G777160
TU885547 lncRNA upstream 34497 18065796 ~ 18070684 (+) True G777146
TU885521 lncRNA upstream 67315 18037642 ~ 18037866 (+) True G777127
TU885513 lncRNA upstream 82782 18022159 ~ 18022399 (+) True G777119
TU885512 lncRNA upstream 83097 18021802 ~ 18022084 (+) True G777118
TU885564 lncRNA downstream 157 18105555 ~ 18105762 (+) True G777162
TU885570 lncRNA downstream 13715 18119113 ~ 18119321 (+) True G777167
TU885575 lncRNA downstream 17273 18122671 ~ 18122881 (+) True G777172
TU885576 lncRNA downstream 18176 18123574 ~ 18123808 (+) True G777173
TU885579 lncRNA downstream 20210 18125608 ~ 18125952 (+) True G777176
XM_036987487.1 mRNA upstream 758930 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 799552 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 836147 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 839764 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 862631 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 82340 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 83355 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 145534 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 195970 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 197736 18303134 ~ 18320759 (+) True LOC110531660
TU885507 other upstream 99513 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 102999 18001889 ~ 18002182 (+) True G777111
TU885190 other upstream 446036 17658197 ~ 17659145 (+) True G776818
TU884828 other upstream 711060 17380625 ~ 17394121 (+) True G776487
TU884851 other upstream 799666 17297055 ~ 17305515 (+) False LOC110532942
TU885567 other downstream 2621 18108019 ~ 18108482 (+) True G777165
TU885818 other downstream 394216 18499614 ~ 18500018 (+) True G777396
TU885868 other downstream 550933 18656331 ~ 18657574 (+) True LOC110531664
TU887666 other downstream 1712290 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 1712290 19817688 ~ 19824606 (+) True LOC110531694

Expression Profile