RNA id: TU885576


Basic Information

Item Value
RNA id TU885576
length 235
lncRNA type intronic
GC content 0.48
exon number 1
gene id G777173
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18123574 ~ 18123808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTAGCCTGTTCTTTTCTGCCACATCAGCTGAAAGCTCTATTCATATCTCCCGACGCTTTCGCCTCGtaaactctctctcacacagaactTGGCCTTTTCAGTTAGAGGAGCAAAAACAAGTGCCTGCTGCTGAGGATGCTTCACCGTGCAGCTAGGAGACAAGCAGCTCCTCatactctccctttctccctgagtttcatccttctctctctctatatctctctctctatatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885575 lncRNA upstream 693 18122671 ~ 18122881 (+) True G777172
TU885570 lncRNA upstream 4253 18119113 ~ 18119321 (+) True G777167
TU885564 lncRNA upstream 17812 18105555 ~ 18105762 (+) True G777162
TU885563 lncRNA upstream 18176 18105181 ~ 18105398 (+) True G777161
TU885562 lncRNA upstream 19775 18103576 ~ 18103799 (+) True G777160
TU885579 lncRNA downstream 1800 18125608 ~ 18125952 (+) True G777176
TU885581 lncRNA downstream 4104 18127912 ~ 18129466 (+) False G777178
TU885583 lncRNA downstream 4104 18127912 ~ 18129097 (+) True G777178
TU885584 lncRNA downstream 6564 18130372 ~ 18130751 (+) True G777179
TU885585 lncRNA downstream 12439 18136247 ~ 18136650 (+) True G777180
XM_036987487.1 mRNA upstream 777323 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 817945 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 854540 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 858157 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 881024 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 63930 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 64945 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 127124 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 177560 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 179326 18303134 ~ 18320759 (+) True LOC110531660
TU885567 other upstream 15092 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 117906 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 121392 18001889 ~ 18002182 (+) True G777111
TU885190 other upstream 464429 17658197 ~ 17659145 (+) True G776818
TU884828 other upstream 729453 17380625 ~ 17394121 (+) True G776487
TU885818 other downstream 375806 18499614 ~ 18500018 (+) True G777396
TU885868 other downstream 532523 18656331 ~ 18657574 (+) True LOC110531664
TU887666 other downstream 1693880 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 1693880 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 1752460 19876268 ~ 19892447 (+) True LOC110531697

Expression Profile