RNA id: TU885579


Basic Information

Item Value
RNA id TU885579
length 345
lncRNA type intronic
GC content 0.48
exon number 1
gene id G777176
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18125608 ~ 18125952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgtgtgacaggagagagagacagaaggtaagAGGGAGAGCGGTGAGAGAGGAATGGACAAGAGGATGGGAAATAGACAAGAGacggggagagaaagaaagaggtagagaacgagagagagagagagtgaggcagcGAGTCCATGAAAAGTCCATGAAAAAACAGGCCAACGTAACTTGAAGAAGAGATTGACACgtgtagagatggaggagggcagCGGGGGAGTTGGATAATGTAGAGGTGAACACCCTAAACATAAAAAGCAGCGAAATGAGGGATGGTCTTCAGGATAACTCCTCATCACAGTCACCAGTACATTTGCTACAAAGCCAAAATGTGGACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885576 lncRNA upstream 1800 18123574 ~ 18123808 (+) True G777173
TU885575 lncRNA upstream 2727 18122671 ~ 18122881 (+) True G777172
TU885570 lncRNA upstream 6287 18119113 ~ 18119321 (+) True G777167
TU885564 lncRNA upstream 19846 18105555 ~ 18105762 (+) True G777162
TU885563 lncRNA upstream 20210 18105181 ~ 18105398 (+) True G777161
TU885581 lncRNA downstream 1960 18127912 ~ 18129466 (+) False G777178
TU885583 lncRNA downstream 1960 18127912 ~ 18129097 (+) True G777178
TU885584 lncRNA downstream 4420 18130372 ~ 18130751 (+) True G777179
TU885585 lncRNA downstream 10295 18136247 ~ 18136650 (+) True G777180
TU885608 lncRNA downstream 43994 18169946 ~ 18170485 (+) True G777201
XM_036987487.1 mRNA upstream 779357 17339272 ~ 17346251 (+) True LOC110531644
XM_036989266.1 mRNA upstream 819979 17292470 ~ 17305629 (+) False LOC110532942
XM_036987483.1 mRNA upstream 856574 17266030 ~ 17269034 (+) True LOC118966009
XM_036989265.1 mRNA upstream 860191 17254266 ~ 17265417 (+) True LOC118966167
XR_005053440.1 mRNA upstream 883058 17240870 ~ 17242550 (+) False LOC118966176
XM_021614973.2 mRNA downstream 61786 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 62801 18188753 ~ 18190442 (+) True LOC110531656
XM_021614977.2 mRNA downstream 124980 18250932 ~ 18256403 (+) True LOC110531658
XM_021614979.2 mRNA downstream 175416 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA downstream 177182 18303134 ~ 18320759 (+) True LOC110531660
TU885567 other upstream 17126 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 119940 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 123426 18001889 ~ 18002182 (+) True G777111
TU885190 other upstream 466463 17658197 ~ 17659145 (+) True G776818
TU884828 other upstream 731487 17380625 ~ 17394121 (+) True G776487
TU885818 other downstream 373662 18499614 ~ 18500018 (+) True G777396
TU885868 other downstream 530379 18656331 ~ 18657574 (+) True LOC110531664
TU887666 other downstream 1691736 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 1691736 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 1750316 19876268 ~ 19892447 (+) True LOC110531697

Expression Profile