RNA id: TU886704


Basic Information

Item Value
RNA id TU886704
length 204
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G778171
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18227878 ~ 18248665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaaaacatccccaaagcaggatgtttccacccccatgcttcacagtaggtatggtgttctttttaaaaattttacccctttttctccccaatttcgtggtatccaattgttgtagtagctactatcttgtctcattgctacaactcccgtacgggctcgggagagacgaaggttgaatgtcatgcgtcctccgatacacaac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886702 lncRNA downstream 5064 18222580 ~ 18222814 (-) True G778169
TU886561 lncRNA downstream 73198 18149564 ~ 18154680 (-) False LOC110531652
TU886566 lncRNA downstream 74894 18149564 ~ 18152984 (-) True LOC110531652
TU886563 lncRNA downstream 75175 18148319 ~ 18152703 (-) False LOC110531652
TU886564 lncRNA downstream 75175 18149564 ~ 18152703 (-) False LOC110531652
TU886745 lncRNA upstream 75297 18323962 ~ 18324384 (-) False G778207
TU886742 lncRNA upstream 75415 18324080 ~ 18324384 (-) True G778207
TU886748 lncRNA upstream 79105 18327770 ~ 18327989 (-) True G778210
TU886821 lncRNA upstream 184335 18433000 ~ 18434630 (-) True G778279
TU886865 lncRNA upstream 249049 18497714 ~ 18498368 (-) True G778321
XM_021614971.2 mRNA downstream 26934 18190851 ~ 18200944 (-) True LOC110531655
XM_021614970.2 mRNA downstream 27243 18190851 ~ 18200635 (-) False LOC110531655
XM_021614966.2 mRNA downstream 39302 18154842 ~ 18188576 (-) True LOC110531653
XM_021614965.2 mRNA downstream 39303 18154842 ~ 18188575 (-) False LOC110531653
XM_021614978.2 mRNA upstream 35063 18283728 ~ 18298817 (-) True LOC110531659
XM_036987501.1 mRNA upstream 82341 18331006 ~ 18606222 (-) False LOC110531661
XM_036987502.1 mRNA upstream 82341 18331006 ~ 18606222 (-) False LOC110531661
XM_036987503.1 mRNA upstream 82341 18331006 ~ 18606222 (-) False LOC110531661
XM_036987504.1 mRNA upstream 82341 18331006 ~ 18606222 (-) True LOC110531661
TU885197 other downstream 567395 17659690 ~ 17660483 (-) False G776822
TU885195 other downstream 567800 17659690 ~ 17660078 (-) False G776822
TU885196 other downstream 567800 17659804 ~ 17660078 (-) True G776822
TU885192 other downstream 568475 17659016 ~ 17659403 (-) True G776820
TU885186 other downstream 571553 17655988 ~ 17656325 (-) True G776814
TU886754 other upstream 106776 18355441 ~ 18358103 (-) True G778216
TU888932 other upstream 1569026 19817691 ~ 19824571 (-) True G780209
TU889016 other upstream 1823331 20071996 ~ 20075452 (-) True LOC110531704
TU889161 other upstream 2053413 20302078 ~ 20303380 (-) False LOC110531717
TU889162 other upstream 2053413 20302078 ~ 20303380 (-) True LOC110531717

Expression Profile