RNA id: TU886748


Basic Information

Item Value
RNA id TU886748
length 220
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G778210
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18327770 ~ 18327989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTCTGCCAAGCGGGGACCAGAACATGTGAGTCAAGTCCGCCAAGGAGCTTTTACACCAGTCACATGTACCATCAATATTTGGGTAGAATTTGGACAATCTGGCCTTACTGGAACGGATACAGTGAAGTACCTTAAACTGTATAAGCCTGAGCCGGGCACAAGAAGAGCTTCCATTTACCCGAAGGCAGGCACTATTACAGACTTTTGTCACAGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886745 lncRNA downstream 3386 18323962 ~ 18324384 (-) False G778207
TU886742 lncRNA downstream 3386 18324080 ~ 18324384 (-) True G778207
TU886704 lncRNA downstream 79105 18227878 ~ 18248665 (-) True G778171
TU886702 lncRNA downstream 104956 18222580 ~ 18222814 (-) True G778169
TU886561 lncRNA downstream 173090 18149564 ~ 18154680 (-) False LOC110531652
TU886821 lncRNA upstream 105011 18433000 ~ 18434630 (-) True G778279
TU886865 lncRNA upstream 169725 18497714 ~ 18498368 (-) True G778321
TU886927 lncRNA upstream 259284 18587273 ~ 18587740 (-) True G778380
TU886940 lncRNA upstream 281132 18609121 ~ 18609333 (-) True G778393
TU886948 lncRNA upstream 298508 18626497 ~ 18626709 (-) True G778401
XM_021614978.2 mRNA downstream 28953 18283728 ~ 18298817 (-) True LOC110531659
LOC110532944 mRNA downstream 82675 18236222 ~ 18245095 (-) True LOC110532944
XM_021614971.2 mRNA downstream 126826 18190851 ~ 18200944 (-) True LOC110531655
XM_021614970.2 mRNA downstream 127135 18190851 ~ 18200635 (-) False LOC110531655
XM_021614966.2 mRNA downstream 139194 18154842 ~ 18188576 (-) True LOC110531653
XM_036987501.1 mRNA upstream 3017 18331006 ~ 18606222 (-) False LOC110531661
XM_036987502.1 mRNA upstream 3017 18331006 ~ 18606222 (-) False LOC110531661
XM_036987503.1 mRNA upstream 3017 18331006 ~ 18606222 (-) False LOC110531661
XM_036987504.1 mRNA upstream 3017 18331006 ~ 18606222 (-) True LOC110531661
LOC110532946 mRNA upstream 659833 18987822 ~ 18989644 (-) True LOC110532946
TU885197 other downstream 667287 17659690 ~ 17660483 (-) False G776822
TU885195 other downstream 667692 17659690 ~ 17660078 (-) False G776822
TU885196 other downstream 667692 17659804 ~ 17660078 (-) True G776822
TU885192 other downstream 668367 17659016 ~ 17659403 (-) True G776820
TU885186 other downstream 671445 17655988 ~ 17656325 (-) True G776814
TU886754 other upstream 27452 18355441 ~ 18358103 (-) True G778216
TU888932 other upstream 1489702 19817691 ~ 19824571 (-) True G780209
TU889016 other upstream 1744007 20071996 ~ 20075452 (-) True LOC110531704
TU889161 other upstream 1974089 20302078 ~ 20303380 (-) False LOC110531717
TU889162 other upstream 1974089 20302078 ~ 20303380 (-) True LOC110531717

Expression Profile