RNA id: TU886754


Basic Information

Item Value
RNA id TU886754
length 624
RNA type TUCP
GC content 0.45
exon number 2
gene id G778216
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18355441 ~ 18358103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtaACACGAGGAATTAAATACACaggaatggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcaatgtgaggctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcagtgtggagctatatacagggagtaccagtaccagatcagtgtggagctatatacagggagtaccagtaccagatcagtgtggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcagtgtggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcagtgtggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcaatgtggagctatatacagggagaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886748 lncRNA downstream 27452 18327770 ~ 18327989 (-) True G778210
TU886745 lncRNA downstream 31057 18323962 ~ 18324384 (-) False G778207
TU886742 lncRNA downstream 31057 18324080 ~ 18324384 (-) True G778207
TU886704 lncRNA downstream 106776 18227878 ~ 18248665 (-) True G778171
TU886702 lncRNA downstream 132627 18222580 ~ 18222814 (-) True G778169
TU886821 lncRNA upstream 74897 18433000 ~ 18434630 (-) True G778279
TU886865 lncRNA upstream 139611 18497714 ~ 18498368 (-) True G778321
TU886927 lncRNA upstream 229170 18587273 ~ 18587740 (-) True G778380
TU886940 lncRNA upstream 251018 18609121 ~ 18609333 (-) True G778393
TU886948 lncRNA upstream 268394 18626497 ~ 18626709 (-) True G778401
XM_021614978.2 mRNA downstream 56624 18283728 ~ 18298817 (-) True LOC110531659
LOC110532944 mRNA downstream 110346 18236222 ~ 18245095 (-) True LOC110532944
XM_021614971.2 mRNA downstream 154497 18190851 ~ 18200944 (-) True LOC110531655
XM_021614970.2 mRNA downstream 154806 18190851 ~ 18200635 (-) False LOC110531655
XM_021614966.2 mRNA downstream 166865 18154842 ~ 18188576 (-) True LOC110531653
LOC110532946 mRNA upstream 629719 18987822 ~ 18989644 (-) True LOC110532946
XM_021614993.2 mRNA upstream 651989 19010092 ~ 19017404 (-) False LOC110531673
XM_021614994.2 mRNA upstream 651989 19010092 ~ 19017404 (-) True LOC110531673
XM_036987508.1 mRNA upstream 659443 19017546 ~ 19035959 (-) False LOC110531672
XM_036987509.1 mRNA upstream 659443 19017546 ~ 19047472 (-) False LOC110531672
TU885197 other downstream 694958 17659690 ~ 17660483 (-) False G776822
TU885195 other downstream 695363 17659690 ~ 17660078 (-) False G776822
TU885196 other downstream 695363 17659804 ~ 17660078 (-) True G776822
TU885192 other downstream 696038 17659016 ~ 17659403 (-) True G776820
TU885186 other downstream 699116 17655988 ~ 17656325 (-) True G776814
TU888932 other upstream 1459588 19817691 ~ 19824571 (-) True G780209
TU889016 other upstream 1713893 20071996 ~ 20075452 (-) True LOC110531704
TU889161 other upstream 1943975 20302078 ~ 20303380 (-) False LOC110531717
TU889162 other upstream 1943975 20302078 ~ 20303380 (-) True LOC110531717
TU889401 other upstream 2572857 20930960 ~ 20933147 (-) True LOC110531730

Expression Profile