RNA id: TU886948


Basic Information

Item Value
RNA id TU886948
length 213
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G778401
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18626497 ~ 18626709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAGGAGAAAGAGgctttccttctccacctccagtAAAATCCACCAGAGGAATGTATTTGTTATCAGGCTTTTCCCACCAAAACTATAACACGGTCAAAAGTGGATAGTGGAACAATAAATCTAACATAagaatgtggggaatggtcagtgGGGAGCATTAGACAACTAATGTCATATTAGTCATTAAAAAGGGTATGGACGAAATACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886940 lncRNA downstream 17164 18609121 ~ 18609333 (-) True G778393
TU886927 lncRNA downstream 38757 18587273 ~ 18587740 (-) True G778380
TU886865 lncRNA downstream 128129 18497714 ~ 18498368 (-) True G778321
TU886821 lncRNA downstream 191867 18433000 ~ 18434630 (-) True G778279
TU886748 lncRNA downstream 298508 18327770 ~ 18327989 (-) True G778210
TU886959 lncRNA upstream 21675 18648384 ~ 18711755 (-) True G778411
TU887011 lncRNA upstream 89071 18715780 ~ 18736719 (-) True G778455
TU887131 lncRNA upstream 267627 18894336 ~ 18894635 (-) True G778574
TU887132 lncRNA upstream 268552 18895261 ~ 18895558 (-) True G778575
TU887142 lncRNA upstream 289591 18916300 ~ 18916609 (-) True G778584
XM_036987501.1 mRNA downstream 20275 18331006 ~ 18606222 (-) False LOC110531661
XM_036987502.1 mRNA downstream 20275 18331006 ~ 18606222 (-) False LOC110531661
XM_036987503.1 mRNA downstream 20275 18331006 ~ 18606222 (-) False LOC110531661
XM_036987504.1 mRNA downstream 20275 18331006 ~ 18606222 (-) True LOC110531661
XM_021614978.2 mRNA downstream 327680 18283728 ~ 18298817 (-) True LOC110531659
LOC110532946 mRNA upstream 361113 18987822 ~ 18989644 (-) True LOC110532946
XM_021614993.2 mRNA upstream 383383 19010092 ~ 19017404 (-) False LOC110531673
XM_021614994.2 mRNA upstream 383383 19010092 ~ 19017404 (-) True LOC110531673
XM_036987508.1 mRNA upstream 390837 19017546 ~ 19035959 (-) False LOC110531672
XM_036987509.1 mRNA upstream 390837 19017546 ~ 19047472 (-) False LOC110531672
TU886754 other downstream 268394 18355441 ~ 18358103 (-) True G778216
TU885197 other downstream 966014 17659690 ~ 17660483 (-) False G776822
TU885195 other downstream 966419 17659690 ~ 17660078 (-) False G776822
TU885196 other downstream 966419 17659804 ~ 17660078 (-) True G776822
TU885192 other downstream 967094 17659016 ~ 17659403 (-) True G776820
TU888932 other upstream 1190982 19817691 ~ 19824571 (-) True G780209
TU889016 other upstream 1445287 20071996 ~ 20075452 (-) True LOC110531704
TU889161 other upstream 1675369 20302078 ~ 20303380 (-) False LOC110531717
TU889162 other upstream 1675369 20302078 ~ 20303380 (-) True LOC110531717
TU889401 other upstream 2304251 20930960 ~ 20933147 (-) True LOC110531730

Expression Profile