RNA id: TU885896


Basic Information

Item Value
RNA id TU885896
length 204
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G777469
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18628074 ~ 18628277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTTAGATGCCCAAAAATAGGACGTTTTGAGTGAGGTGACAATGTAGAATGTGCTCTTTCTACGTTTATAGGCAACCTTTCCGTTTTTTACAATCCATGATCTTGGCTGTCTAACTGATGACGGAGTTAGagcaggtctcttcagagatacCAAATTTGACtttaaatgtgtgtttgtgtgacctcAGCTCAGCCTATCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885891 lncRNA upstream 7452 18620385 ~ 18620622 (+) True G777464
TU885882 lncRNA upstream 18471 18609202 ~ 18609603 (+) True G777455
TU885872 lncRNA upstream 30576 18593619 ~ 18597498 (+) True G777448
TU885856 lncRNA upstream 41665 18576278 ~ 18586409 (+) True G777434
TU885712 lncRNA upstream 271891 18355280 ~ 18356183 (+) True G777295
TU885898 lncRNA downstream 2877 18631154 ~ 18631362 (+) True G777471
TU885901 lncRNA downstream 4993 18633270 ~ 18633720 (+) True G777474
TU885925 lncRNA downstream 35466 18663743 ~ 18722039 (+) True G777498
TU886031 lncRNA downstream 168421 18796698 ~ 18796914 (+) True G777587
TU886035 lncRNA downstream 171834 18800111 ~ 18800372 (+) True G777591
XM_021614979.2 mRNA upstream 307315 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA upstream 307315 18303134 ~ 18320759 (+) True LOC110531660
XM_021614977.2 mRNA upstream 371671 18250932 ~ 18256403 (+) True LOC110531658
XM_021614973.2 mRNA upstream 437632 18187738 ~ 18190442 (+) False LOC110531656
XM_021614981.2 mRNA downstream 12378 18640655 ~ 18648675 (+) True LOC110531663
XM_021614983.2 mRNA downstream 27900 18656177 ~ 18673318 (+) False LOC110531664
XM_021614984.2 mRNA downstream 90088 18718365 ~ 18833482 (+) True LOC110531665
XR_005053441.1 mRNA downstream 216999 18845276 ~ 18846593 (+) False LOC118966177
XM_036987505.1 mRNA downstream 283473 18911750 ~ 18928236 (+) False chrnb1l
TU885818 other upstream 128056 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 519592 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 622406 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 625892 18001889 ~ 18002182 (+) True G777111
TU885190 other upstream 968929 17658197 ~ 17659145 (+) True G776818
TU885868 other downstream 28054 18656331 ~ 18657574 (+) True LOC110531664
TU887666 other downstream 1189411 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 1189411 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 1247991 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 1381239 20009516 ~ 20022036 (+) False LOC110531703

Expression Profile