RNA id: TU886040


Basic Information

Item Value
RNA id TU886040
length 234
lncRNA type intronic
GC content 0.41
exon number 1
gene id G777596
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18807010 ~ 18807243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATcttgatagccctatttggtaaaagaccaagtccttattatggcaagaacagctcaaataagcaaagagaaatgacagcccatcattattttaagacatgaaggtcagtcaatctggaaaatgtcagtgTAGTCACAAAACcataaagcgctatgatgaaactggctctcatgaggaccaccacaggaaaggaagacctctgcagagttcattagaattaactgcacctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886035 lncRNA upstream 6638 18800111 ~ 18800372 (+) True G777591
TU886031 lncRNA upstream 10096 18796698 ~ 18796914 (+) True G777587
TU885925 lncRNA upstream 84971 18663743 ~ 18722039 (+) True G777498
TU885901 lncRNA upstream 173290 18633270 ~ 18633720 (+) True G777474
TU885898 lncRNA upstream 175648 18631154 ~ 18631362 (+) True G777471
TU886043 lncRNA downstream 2944 18810187 ~ 18810457 (+) True G777599
TU886045 lncRNA downstream 3653 18810896 ~ 18811237 (+) True G777601
TU886047 lncRNA downstream 6482 18813725 ~ 18813955 (+) True G777603
TU886065 lncRNA downstream 38588 18845831 ~ 18846270 (+) True LOC118966177
TU886087 lncRNA downstream 67850 18875093 ~ 18875295 (+) True G777643
XM_021614983.2 mRNA upstream 133692 18656177 ~ 18673318 (+) False LOC110531664
XM_021614981.2 mRNA upstream 158335 18640655 ~ 18648675 (+) True LOC110531663
XM_021614979.2 mRNA upstream 486251 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA upstream 486251 18303134 ~ 18320759 (+) True LOC110531660
XM_021614977.2 mRNA upstream 550607 18250932 ~ 18256403 (+) True LOC110531658
XR_005053441.1 mRNA downstream 38033 18845276 ~ 18846593 (+) False LOC118966177
XM_036987505.1 mRNA downstream 104507 18911750 ~ 18928236 (+) False chrnb1l
XM_036987506.1 mRNA downstream 104507 18911750 ~ 18928236 (+) True chrnb1l
XM_021614985.2 mRNA downstream 131352 18938595 ~ 18950268 (+) True LOC110531666
XM_021614986.2 mRNA downstream 154094 18961337 ~ 18963378 (+) False LOC110531667
TU885868 other upstream 149436 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 306992 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 698528 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 801342 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 804828 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 1010445 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 1010445 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 1069025 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 1202273 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 1202273 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile