RNA id: TU886166


Basic Information

Item Value
RNA id TU886166
length 534
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G777707
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19076112 ~ 19076767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagttcaagggggccgaatactttcgcaaggcactgtataaacctATTACTCCATTGTTTAAGTAATCTAATTGTGAAAACACTATAGCTTTAGAACATGGTCAACTATCATTTTGAGCTTATAGATGGTCAGTCCATCTATCAAAGGCTCAGTCTATGAATTTCAGAGTAGTTAGTCATATACAGTTCTCCAGCCTCAGCTCAACAAGTGGCTGGGTCTTTGTTTGAATACCAGATTGCCCTTTTAAATATAACCATGATCTTGGTTGTGGAAATGTAAGGTGTCATTGTCAGGTGCAGATTTATTTTATAGATAATTCCGTCCATAAGAAAGTAGGGACACAGTCTTAAGGTCAGCAGATACATATTGTTGTGGGGTTTATTCATTTAGTTTGCACAAGCACAAGATTTTGCTGTGAAAACAAGCATTTCTTGATGGACACATTAATGCTACTGAGTCCCCCTCTGTTTTGGCCCTTTTGGTTCCTATTGAATGCACCCCTATGTTTGAAGTTCTAGGCCCCTGGTAAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886161 lncRNA upstream 1554 19072513 ~ 19074558 (+) True LOC110532947
TU886217 lncRNA upstream 10763 19065126 ~ 19065349 (+) True G777757
TU886215 lncRNA upstream 11782 19064102 ~ 19064330 (+) True G777755
TU886214 lncRNA upstream 12655 19063234 ~ 19063457 (+) True G777754
TU886212 lncRNA upstream 19690 19056034 ~ 19056422 (+) True G777752
TU886329 lncRNA downstream 199579 19276224 ~ 19276807 (+) True G777865
TU886357 lncRNA downstream 232550 19309195 ~ 19309430 (+) True G777889
TU886385 lncRNA downstream 267975 19344620 ~ 19349872 (+) True G777913
TU886378 lncRNA downstream 322868 19399513 ~ 19400279 (+) True LOC110531683
TU887563 lncRNA downstream 468426 19545071 ~ 19555880 (+) True G778967
XM_036987514.1 mRNA upstream 2341 19070843 ~ 19073771 (+) False LOC110532947
LOC110533003 mRNA upstream 13801 19061168 ~ 19062311 (+) True LOC110533003
XM_021614991.2 mRNA upstream 66795 19007551 ~ 19009317 (+) True si:dkey-165a24.9
XM_036987513.1 mRNA upstream 68770 18995065 ~ 19007342 (+) True ugt5g1
XM_036987512.1 mRNA upstream 69818 18995065 ~ 19006294 (+) False ugt5g1
XM_036986922.1 mRNA downstream 11018 19087663 ~ 19105963 (+) False rbm4b
XR_002474737.2 mRNA downstream 16423 19093068 ~ 19107907 (+) True LOC110531675
XM_036986920.1 mRNA downstream 25342 19101987 ~ 19105963 (+) False rbm4b
NM_001160608.1 mRNA downstream 25447 19102092 ~ 19105988 (+) True rbm4b
LOC118966168 mRNA downstream 55234 19131879 ~ 19144863 (+) True LOC118966168
TU885868 other upstream 418538 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 576094 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 967630 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1070444 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1073930 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 741043 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 741043 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 799623 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 932871 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 932871 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile